Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03397 ATGACCTCTGCTCACAACCTTACTGATAATGAAGATGAAGGGCAGCACCAGTCAGAATCCCAAGTGCAGTCCCCGTCTACAAATGGAATTTCTGATTCCGCTATTAGAACCCAGAATGTCAATGTACAGTATGCAACACCTGGCCAGCTTGGAGCTGGGCATGCAATGGTACCACCTGTGTATCCATATCCAGATCCTTATTATAGAAGCATCTTTGCTCCCTATGATACTCAACCTTATCCCCCACAAGCCTATGGTGGACAGCCAATGGTCCATCTTCAGTTAATGGGAATTCAGCAAGCTGGTGTTCCTCTCCCAACTGATGCAGTTGAGGAGCCCGTGTTTGTCAATGCAAAACAATATCACGGTATATTGAGACGTAGACAATCCCGTGCTAAAGCTGAATCAGAAAATAAAGCTATAAGAAATAGGAAGCCATACTTGCATGAATCTCGACACATGCACGCACTGAGAAGACCGAGAGGATGTGGTGGTCGGTTTCTGAATTCAAAGAAAGAAGAGAACGAGCATAATGATGTAGCATCAGCAGACAAATCACAATCCAATATCAATCTCAATTCTGATAAAAATGATCAAACGTCATCAGATAGGACATCCTGA 621 0.4364 MTSAHNLTDNEDEGQHQSESQVQSPSTNGISDSAIRTQNVNVQYATPGQLGAGHAMVPPVYPYPDPYYRSIFAPYDTQPYPPQAYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKAIRNRKPYLHESRHMHALRRPRGCGGRFLNSKKEENEHNDVASADKSQSNINLNSDKNDQTSSDRTS 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03397 206 ProSitePatterns NF-YA/HAP2 subunit signature. 115 135 IPR018362 GO:0003677|GO:0016602
Vian1g03397 206 MobiDBLite consensus disorder prediction 129 147 - -
Vian1g03397 206 MobiDBLite consensus disorder prediction 129 206 - -
Vian1g03397 206 MobiDBLite consensus disorder prediction 1 32 - -
Vian1g03397 206 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 10 205 IPR001289 GO:0003700|GO:0006355
Vian1g03397 206 PRINTS CCAAT-binding transcription factor subunit B signature 113 135 IPR001289 GO:0003700|GO:0006355
Vian1g03397 206 PRINTS CCAAT-binding transcription factor subunit B signature 144 167 IPR001289 GO:0003700|GO:0006355
Vian1g03397 206 SMART cbf3 109 170 IPR001289 GO:0003700|GO:0006355
Vian1g03397 206 MobiDBLite consensus disorder prediction 166 181 - -
Vian1g03397 206 MobiDBLite consensus disorder prediction 17 32 - -
Vian1g03397 206 Gene3D - 110 171 - -
Vian1g03397 206 ProSiteProfiles NF-YA/HAP2 family profile. 110 170 IPR001289 GO:0003700|GO:0006355
Vian1g03397 206 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 112 167 IPR001289 GO:0003700|GO:0006355
Vian1g03397 206 MobiDBLite consensus disorder prediction 182 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03397 Vian-Chr1 56339493 56343311 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03397 2 206 CCAAT-HAP2 Transcription Factor Family AT1G30500 57.488 1.07e-72 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vian1g03397 CBFB_NFYA 3.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03397 K08064 - gmx:100499754 380.948