Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03394 ATGGCCATCTTCTTGCCATTGTCCTTGTGGCAAAAACATCTTAGGTATGTGAAAGATGATAAATATTGGGAGCTTGTACTTGACAAATTAAGCAACCCGAATCCTTTCTATGATTATCAAGATTGTGACCGAATTGGCATTAGTAGAGTCATGGTCAATGCATTTGTAAATATTATTTGGCAAGACATCGATGATGAACTAAAGCTTTGCCTCCAACTCAGTTTACCTGTTCACAACATTAAAAATGGGGTGAGAGATGATATCTTGGTTTCTTATTGGGCTAATACATTACGATACACACAAGAGCTTGGTGAATACAAGAGACAGTTACAATATTACCTCGAGGAGCTTCTAGACTGTTTTCTCTTGTTGAAATTTGAAAGTAGAGATGTCTGTTTGCCAATAGAAACCTATGATATAATTAAATCATTACACATCTCAGAACCTTCCATCATATGGGATGGTGCATTAGGATTGACGGAGATTGGACAATGGCATAGTCTTATTCAGATAGAATTGGTTAACAATAAAATATGTGAACTACCACAATCACCAGACTGCCCCAAACTCAAAGTGTTGTTGTTGCAGGGCAATGCTGATTTATTGGATATCCCTGATTTATTTTTCGACCACATGCCTCTACTTCAACACTTGGACTTATCCTACACTAGTATAAGGGATTTGCCCCCTTCTCTCGCCAAATTGATGCAACTTAAGAAACTATATCTTAAAGGTTGTGATCTCTTCATGGAAATATCCCCGCAAATTTTTCAGCTGAAGAATCTTGAAGAGCTTGATCTTCACGGGACTTTGATAACCCATTTGCCAAAAGACATTCAAGAATTGATCAACCTGCAACGCTTAGCCCTATGCTTTGATGCATACCATCATGTACTTAGTCGTGGTAAAAGAGGCAAGCAGATTTTTAACACAATGATAATTCCTCGTGGAGTGATATCAAATCTTACTCAGTTGAATTATCTAAGCCTTGACGTCGACCCTGAAGATGAGCAATGGAGCGAGAATGTTATTAGTGTCTTGGTGGAAATTTTGGGACTAGAGAAGTTGAAGACGGTGAGCATGTATGTTCCAAAGGCTGATCTCTTGGAACTCATACCGGCCGAAAAATCTCTCAATTTCCGATTGGTTGTTGGTCATCACATGCGGCGTCTAATATCCCGGGTAACACCTGAACTAGATACAAAATTCAAAGATTTTGATTATAGCATGAAGTTTGTTAATGGTGTAAATGTTCCCAAAGGAGTAACGATGAACCTTTGTCGCTTCAAGGCTTTGTATCTTGACCGACATATGACCATCAAGAGTCTTTCAGATTTCAATTTGAACAACGTACGCAGGTTGGAAGTTTGCATATTGGCGGAATGTAATGAAATGGAAACAATTGTCGGTGGTGATAATTTACCTGATGAACGTTTTTCTCTAATGTTGGAGTTGTTGAGTGTATTTTATATGAAGAATTTAAGAAGCATTTGCCAAGGGTGTGGTTCCTTTTACTACTTAAAGTATATGGCATTGCACACTTGCCCCATGTTAACTACTATCTTCACCTTACGTACTTTTATCAGCCTTCCCTTTTTGGAAGAGATTCATGTTGAAGATTGTCCAAAAGTAACCACCCTAATAAGTCATGACTCACCAAAACGTAAAGCAGCGTTTTTCCTGCCCAAGTTGAGAGTGATATCGCTTCTTTATCTTCCCAACTTGGTGAATATTTTTAATGGCCTGCCTGTTGAACATGTTTTAGCAGAAATGATTTTTTATTGTTGCCCAAAACTCCAAAGTCTTTCCAGGTCGGAGTTAGCATGGGAATATTTGAAGTTCATCAAAGGAGAAAGGATGTGGTGGGAAGCATTGGATTGGAGTGTATCAGAGTGGGGTAATGCTGGTCGACCCTACTATGAGCAATTTTTTAAACCAATTAATGTGGAGGCTGACATGATGAACGCACCAGCTGCACATCAAGAGACTCAACTAAATAAATATCACGGCGGAATGTATCAGGGAGTTTCAAGTTCTACCGAGTTGATAACGCCTCTTTTGTTGCCTTCAACTCCATTTCCGTTATCGAGTAGTAAAGAAGGTGAAGCCCAAAAGCGAAAAGCCGTTATTGAGCCAATAATAGTACCACCGTTGTCAAAAAAGAAACCAAACCAGGATCGTGAAGCTATGAAAATATTGATACATAATGATCAGAGTTTAGATGATGGATATACGTGGAGAAAATATAGGCAGATGGACGTTCTTGGAGCTAAGTATTCGAGATCATATTACCGCTGCAATGAACGTGGGTGCAAAGCAACAAAACAAGTTCAAAGGTTAGATGACCAAACAACGATTGAGGTAAATTACATAGGAACTCATAGTTGCACCCCTAAACAGGATTTGATCGCGGAGACATAA 2421 0.3899 MAIFLPLSLWQKHLRYVKDDKYWELVLDKLSNPNPFYDYQDCDRIGISRVMVNAFVNIIWQDIDDELKLCLQLSLPVHNIKNGVRDDILVSYWANTLRYTQELGEYKRQLQYYLEELLDCFLLLKFESRDVCLPIETYDIIKSLHISEPSIIWDGALGLTEIGQWHSLIQIELVNNKICELPQSPDCPKLKVLLLQGNADLLDIPDLFFDHMPLLQHLDLSYTSIRDLPPSLAKLMQLKKLYLKGCDLFMEISPQIFQLKNLEELDLHGTLITHLPKDIQELINLQRLALCFDAYHHVLSRGKRGKQIFNTMIIPRGVISNLTQLNYLSLDVDPEDEQWSENVISVLVEILGLEKLKTVSMYVPKADLLELIPAEKSLNFRLVVGHHMRRLISRVTPELDTKFKDFDYSMKFVNGVNVPKGVTMNLCRFKALYLDRHMTIKSLSDFNLNNVRRLEVCILAECNEMETIVGGDNLPDERFSLMLELLSVFYMKNLRSICQGCGSFYYLKYMALHTCPMLTTIFTLRTFISLPFLEEIHVEDCPKVTTLISHDSPKRKAAFFLPKLRVISLLYLPNLVNIFNGLPVEHVLAEMIFYCCPKLQSLSRSELAWEYLKFIKGERMWWEALDWSVSEWGNAGRPYYEQFFKPINVEADMMNAPAAHQETQLNKYHGGMYQGVSSSTELITPLLLPSTPFPLSSSKEGEAQKRKAVIEPIIVPPLSKKKPNQDREAMKILIHNDQSLDDGYTWRKYRQMDVLGAKYSRSYYRCNERGCKATKQVQRLDDQTTIEVNYIGTHSCTPKQDLIAET 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03394 806 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 65 630 - -
Vian1g03394 806 SMART WRKY_cls 740 798 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian1g03394 806 SUPERFAMILY WRKY DNA-binding domain 736 797 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian1g03394 806 Gene3D Ribonuclease Inhibitor 425 613 IPR032675 -
Vian1g03394 806 Pfam WRKY DNA -binding domain 741 796 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian1g03394 806 ProSiteProfiles WRKY domain profile. 735 795 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian1g03394 806 Pfam Leucine rich repeat 188 248 IPR001611 GO:0005515
Vian1g03394 806 Gene3D WRKY domain 729 799 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian1g03394 806 SMART LRR_typ_2 259 282 IPR003591 -
Vian1g03394 806 SMART LRR_typ_2 212 235 IPR003591 -
Vian1g03394 806 Gene3D Ribonuclease Inhibitor 130 377 IPR032675 -
Vian1g03394 806 SUPERFAMILY L domain-like 144 602 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03394 Vian-Chr1 56292127 56306206 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03394 697 797 WRKY Transcription Factor Family AT5G24110 43.119 1.06e-18 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vian1g03394 LRR_8 1.3e-10 CL0022
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03394 - - var:108342237 1605.11