Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03392 ATGTCTGAGCTTGAACTTGTTGGCCCTCTTGTTGGAGGGATGGGATCGATTGGGGTTGGAGAAATGCATACTACAATTGCATCTAAAATTGCATTTTCCAAAAATCTGGATGACAATTGCAACATTTTGGTTAAAGATACAGAGATGCTACATGCAATAAAGAAGGATAAAGAGATGAAAGCTCAAAGAAACAGCCATAAAGATACTACCAATGCTTACAAACTGTGGACAAACAGGGTATCAGAGGCCACAAAAGAAGTACAGAAGCTGAAGCTTAAATATGAAGAAGAGACCCTACCCTGGTGGCGGATTCTAAAGCGTTCCGATCTGAGTGAAGAAATGGAGAAGAAGAGCAATTGTGTTCGTCAACTTATGAATGATGAATGTTTAAAAGATTTTCTTGTTGATAAACCACCAGAGCCTGTTTTAAAGGAGTTAAATGTTCCACAGATAAGTGGATATCCAACCCTTCAAGGCGCTTTGGATAATACTCTGGTTTTGCTGAAAAATAATAAGATCAAGATCATTGGAGTGTGTGGAACAAAAGGGGTGGGGAAAACAACAATAATGCGGAATCTAAACAACAATGAAGAGATAGCTAAACTGTTTGAAATTGTCATCTTTGTAAAAGTCACACCTAATGATCGTAAGCTTCAAGAGAAAATTGCTCATCGGTTGATGTTGGACAAAGGGATCGACAAGGAGGATAGCGACGATATTGCAAGAAGAATACACAGAGAGCTAGAGAATAAAAGATATTTATTAATTTTGGATGAGGTTGAGGATGCCATCAATTTGGAGCTGTTAGGAATCCCAAGTGATAATAACAATGGCAGTAAGGTGGTAATTGTCACTCGATTCCCTCTTGTTTATAAGTTGAATAGGGTGCAGAGGGTCATCAAAGTCGCGGAGCTATCTCCCGATGAAGCATGGAAGATGTTTAGAGATACTGTCTATGCCTTCAATCCTAAGATTGATTCCCCTGACATTCAACCAACTGCAAAACTTGTATGCAAAAGATGCTCTCGTCTTCCACTTCTCATTTACAATATAGCAAACTCTTTTAAATTGAAAGAGTCTGCTTCTAGTTGGTGGGCAGGACTTGAAGATCTTAAACCATGGCCAGAACTTCAAAGCCAAGGTTTAGAAGAGTTGTACTCGTGTCTGAAGTTCTGTTATGATGAACTAAATGATAAAAGGAAGCAGAAATGCTTTCTATACACTTCACTGTATCCTGCAGATAGCAAGGTTTACTCTGATTATTTAGTGGAGTGTTGGGCAGCACAAGGTTTACTTGGTGATATAAATGATACAAGGTCATATCAAAGTGCACGCAATTGTGGTATTGACATATTAGAACATCTTGCCAATGTCTCTCTACTAGAGAAAGGGGAAGCAATGATATATGTTAACATGAACCATTGCATGAGACAACTTGCATTGCACATATCCTCTAAAGATCCTGAGTGTAGCTTTTATCTCCAAGACGGTGAAGAATCTGAAAATCTCTCAAATTCAAGAGCTTGGCAGCAGGCTAGGTGGGTCTCTATGAGAAAAGTACATGAGTTACGAAGAAGTCAAGATTGCAGCACGATTTTGACTCTGTTGCTGAGAAAAAATCCCGAGCTAACTGCACTACCAGAGTGTTTTTTTGAGAACATGAGCAGTCTACTTCTGCTAGACTTGTATAGTAGCATGATTACACAACTGCCATCATCTCTATCAAAATTGACTGGTCTACGGGGTTTATTCTTGAACAGGTGTGAGCTATTGGAATCACTATCATCTGAAATAGGATTACTTCAATTTCTAGAAGTCCTTGACATACGTGATACTAAAGTAATTTTCATACCTCTACAAATTGGATTCTTGACTAAGCTAAGATGCCTGCGAATCCCATTCATTGCAAGTGAAGATAATGAAGCTCAAAATGTTCATGTGATTTCAAAGCTTCATAGGTTGGAAGAATTAACTATTCAAATCATATCCTATGAACAGTGGTGCAATGATGCTAATAATGTGCTGGCACATGTGGCTTCTTTGGAAAATGTAACTCATCTCAGATGTTGTTTTCCCTCCTCAATCATTCTTGGAGAATTTCTTTCAAGAAGCAAATCATGGCATAACAAGCAGAATTCATTTAGATTCACTGTAGGATGCCAGAACTCAAGGCGACCTCAAATACTTGAATTCTTTGAATATAAAATTACTAATTATTTGAGGTACTGCAATGGTGGACAGAGGGATGACCCGGCAATTATTGAGGTACTACCAAAAACTGATGCATTTGAATTAGTCTGCCATAAAGATATAAGAAAATTGTCCAATTTTGCTGGCATAGCTTGTCTGGAACGCATTCGTGGTCTTTTGATTAAAAGATGCAACCAAGTTTTGACAATTGTGTCAGGTGAAACAAGTAGCAATGTCATGAACGGAATCCAAATAGAAACGGCAGTCATCTTACCAAATTTGGAGCAACTTTATTTGGAAAATTTGCTCAATTTAAAATGTGCTTTTAGAGGCCCCCTGCACAGTGGAACATTTTCCAGATTACAAACTCTGTCATTGAAAAATTGTCCAAGACTGAGTCAAATTTTCAGCAATGGAGCAATTCAACATTTTTCAGAACTTCAGAAGCTGAAACTTGAAGATTGTTCAATAATTGAAGAACTTATTGGAGAAGACATTGAAAGAGAAAGGGACGTGCTTCCAAAACTGGAAATACTTCTGCTAGTTAACTTGCCTAACTTCAAAAGTATATGCACAACTCATACATTGGCCTGGTCCTCTTTGGAGCTGTTAAGGATACATAACTGTCATAAGTTTAAAACTTTACCACTAGATAGTGTCAATGCAGTCAACTTAAAGTCCATTAAAGGACAGCAAGAATGGTGGGCTAACTTGGATTGGACAAACAATGAAGAGGTTCTTCAGCGATTGCAACCCATATTTGTTGCTTCCAATGAGTATTTTTCTTAA 2979 0.38 MSELELVGPLVGGMGSIGVGEMHTTIASKIAFSKNLDDNCNILVKDTEMLHAIKKDKEMKAQRNSHKDTTNAYKLWTNRVSEATKEVQKLKLKYEEETLPWWRILKRSDLSEEMEKKSNCVRQLMNDECLKDFLVDKPPEPVLKELNVPQISGYPTLQGALDNTLVLLKNNKIKIIGVCGTKGVGKTTIMRNLNNNEEIAKLFEIVIFVKVTPNDRKLQEKIAHRLMLDKGIDKEDSDDIARRIHRELENKRYLLILDEVEDAINLELLGIPSDNNNGSKVVIVTRFPLVYKLNRVQRVIKVAELSPDEAWKMFRDTVYAFNPKIDSPDIQPTAKLVCKRCSRLPLLIYNIANSFKLKESASSWWAGLEDLKPWPELQSQGLEELYSCLKFCYDELNDKRKQKCFLYTSLYPADSKVYSDYLVECWAAQGLLGDINDTRSYQSARNCGIDILEHLANVSLLEKGEAMIYVNMNHCMRQLALHISSKDPECSFYLQDGEESENLSNSRAWQQARWVSMRKVHELRRSQDCSTILTLLLRKNPELTALPECFFENMSSLLLLDLYSSMITQLPSSLSKLTGLRGLFLNRCELLESLSSEIGLLQFLEVLDIRDTKVIFIPLQIGFLTKLRCLRIPFIASEDNEAQNVHVISKLHRLEELTIQIISYEQWCNDANNVLAHVASLENVTHLRCCFPSSIILGEFLSRSKSWHNKQNSFRFTVGCQNSRRPQILEFFEYKITNYLRYCNGGQRDDPAIIEVLPKTDAFELVCHKDIRKLSNFAGIACLERIRGLLIKRCNQVLTIVSGETSSNVMNGIQIETAVILPNLEQLYLENLLNLKCAFRGPLHSGTFSRLQTLSLKNCPRLSQIFSNGAIQHFSELQKLKLEDCSIIEELIGEDIERERDVLPKLEILLLVNLPNFKSICTTHTLAWSSLELLRIHNCHKFKTLPLDSVNAVNLKSIKGQQEWWANLDWTNNEEVLQRLQPIFVASNEYFS 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03392 992 Coils Coil 73 93 - -
Vian1g03392 992 Gene3D - 304 392 IPR042197 -
Vian1g03392 992 PRINTS Disease resistance protein signature 175 190 - -
Vian1g03392 992 PRINTS Disease resistance protein signature 341 355 - -
Vian1g03392 992 PRINTS Disease resistance protein signature 846 862 - -
Vian1g03392 992 PRINTS Disease resistance protein signature 247 261 - -
Vian1g03392 992 SMART AAA_5 172 307 IPR003593 GO:0016887
Vian1g03392 992 Gene3D - 393 482 IPR036388 -
Vian1g03392 992 SUPERFAMILY L domain-like 521 962 - -
Vian1g03392 992 Gene3D - 146 300 IPR027417 -
Vian1g03392 992 Gene3D Ribonuclease Inhibitor 495 712 IPR032675 -
Vian1g03392 992 Gene3D Ribonuclease Inhibitor 762 969 IPR032675 -
Vian1g03392 992 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 58 946 - -
Vian1g03392 992 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 407 IPR027417 -
Vian1g03392 992 Pfam NB-ARC domain 167 395 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03392 Vian-Chr1 56255080 56258058 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03392 173 565 WRKY Transcription Factor Family AT5G45050 21.359 1.93e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03392 - K13459 gmx:102661619 1638.62