Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03370 ATGACTGCTGATGTAAGATCTGGAAATTCAGACAATGCTAATGCTAAGAAACCTCATTCACGTGTTTCTTATAAGCCAGAAAAATGGATGCTACCTCAACAAGCTGAAGATACATTGACTCAGCTGAATCTTGCAATTGTTGGCCATGTTGATTCTGGAAAATCAACCCTATCTGGTAGGTTACTGCACCTATTGGGACGGATTTCCCAGAAAGAGATGCACAAGTACGAAAAGGAGGCCAAGTTACAGGGCAAGGGATCTTTTGCTTATGCTTGGGCACTTGATGAAAGCTCTGAAGAAAGAGAAAGGGGAATAACTATGACTGTTGCGGTTGCTTATTTTGACACCAAGAAATATCATGTTGTTTTGCTCGACTCTCCTGGCCATAAAGATTTTGTCCCGAACATGATTTCTGGGGCAACACAAGCAGATGCTGCAATCCTTGTTATAGATGCCTCACTTGGTTCATTTGAAGCTGGTATGGATGGCAACAAAGGGCAAACAAGGGAGCATGCACAACTTATCAGAAGTTTTGGTGTTGATCGGGTCATAGTTGCTGTAAATAAGATGGATGCTGTTGCGTACACCCAGGATCGATTTGATTTTATAAGGCAGCATCTGGGAGCTTTTCTACACTCATGTGGTTTCAAAGATTCTTCTCTATCTTGGATTCCTATGAGTGCTATGGAAAATCAAAATTTGGTGGCATCCCCTTCTGATCCTCGTTTCAAAAACTGGTATAATGGACCTTATCTGTTAGATGCGATTGACTCTCTCCAAGCTCCTACTAGAGAATTTTCAAAACCTCTACTAATGCCAGTATGTGATGTCATCAAATCAACTACGCTTGGACAGGTATCTGCTTGTGGTAAACTGGAAGCAGGAGCTCTTCGGAGTGGATCTAAGGTCTTAGTTATGCCTTCAGCTGTATTGGGAACGGTACGCTCATTGGAGCGTGACTCTAATGCCTGCACTGTTGCAAGAGCTGGAGATAATGTAGCTGTAACATTGCAAGGTGTCGATGGAAATCAGGTGATGGCAGGAGATGTACTATGCCATCCTGACTTTCCCGTTGCAGCTGCTAGGCATTTGGAGTTGAAAGTGCTAGTGTTGGATGGTGCAAGTCCAATATTGGTGGGCACACAGTTGGAGTTTCATATACACCATGCGAAGGAACCTGCTAGAGTTTCAAGAATATTGTCAGTACTTGATCCCAAGACTGGTAAGGTGACCAAGAAGTCGCCTCGATGTCTCACTGCAAAGCAAAGTGCAGTAATGGAGGTGGCTTTGAATGAGTCTGTCTGTGTGGTAGAGTTCTCTAGTTGTAAAGCTCTTGGAAGGGTGTCCCTAAGATCCATGGGAAGAACAATTGCTGTTGGCGTTGTAACAAGAATAATTGAGGACGAAGGTTAA 1413 0.4345 MTADVRSGNSDNANAKKPHSRVSYKPEKWMLPQQAEDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKEMHKYEKEAKLQGKGSFAYAWALDESSEERERGITMTVAVAYFDTKKYHVVLLDSPGHKDFVPNMISGATQADAAILVIDASLGSFEAGMDGNKGQTREHAQLIRSFGVDRVIVAVNKMDAVAYTQDRFDFIRQHLGAFLHSCGFKDSSLSWIPMSAMENQNLVASPSDPRFKNWYNGPYLLDAIDSLQAPTREFSKPLLMPVCDVIKSTTLGQVSACGKLEAGALRSGSKVLVMPSAVLGTVRSLERDSNACTVARAGDNVAVTLQGVDGNQVMAGDVLCHPDFPVAAARHLELKVLVLDGASPILVGTQLEFHIHHAKEPARVSRILSVLDPKTGKVTKKSPRCLTAKQSAVMEVALNESVCVVEFSSCKALGRVSLRSMGRTIAVGVVTRIIEDEG 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03370 470 FunFam elongation factor 1-alpha isoform X4 360 469 - -
Vian1g03370 470 Pfam Elongation factor Tu C-terminal domain 358 465 IPR004160 -
Vian1g03370 470 FunFam Translation elongation factor EF-1 266 356 - -
Vian1g03370 470 Gene3D - 30 264 IPR027417 -
Vian1g03370 470 PANTHER TRANSLATION FACTOR 37 465 - -
Vian1g03370 470 MobiDBLite consensus disorder prediction 1 17 - -
Vian1g03370 470 SUPERFAMILY Translation proteins 262 356 IPR009000 -
Vian1g03370 470 CDD EF1_alpha 43 262 - -
Vian1g03370 470 CDD HBS1_C_III 357 465 - -
Vian1g03370 470 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 362 466 IPR009001 -
Vian1g03370 470 MobiDBLite consensus disorder prediction 1 26 - -
Vian1g03370 470 FunFam Elongation factor 1 alpha-like protein 32 263 - -
Vian1g03370 470 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 41 284 IPR027417 -
Vian1g03370 470 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 39 263 IPR000795 GO:0003924|GO:0005525
Vian1g03370 470 Gene3D Translation factors 267 356 - -
Vian1g03370 470 Pfam Elongation factor Tu GTP binding domain 42 257 IPR000795 GO:0003924|GO:0005525
Vian1g03370 470 Gene3D Translation factors 360 469 - -
Vian1g03370 470 PRINTS GTP-binding elongation factor signature 138 149 IPR000795 GO:0003924|GO:0005525
Vian1g03370 470 PRINTS GTP-binding elongation factor signature 43 56 IPR000795 GO:0003924|GO:0005525
Vian1g03370 470 PRINTS GTP-binding elongation factor signature 122 132 IPR000795 GO:0003924|GO:0005525
Vian1g03370 470 PRINTS GTP-binding elongation factor signature 102 110 IPR000795 GO:0003924|GO:0005525
Vian1g03370 470 PRINTS GTP-binding elongation factor signature 183 192 IPR000795 GO:0003924|GO:0005525
Vian1g03370 470 Pfam Elongation factor Tu domain 2 290 352 IPR004161 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03370 Vian-Chr1 56046393 56049207 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03370 9 468 Eukaryotic Initiation Factors Gene Family AT5G10630 73.696 0.0 734
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03370 K14416 - gmx:100798594 868.611