Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03368 ATGAGAAACATTGCAATTATGTATTTGCCTGACGGAATCAAACAAGTGAAAAGACTTGACATCCTTGAGTCCAAGCGTTTGCCAGCGAACAATTATAACTGCGTCCCTTTAACACCAAGGTCTAGATTGGAAAGGCTTCTGAGGGAAAGAGAGCTAAGGAAGTCCTTCAAGAATCAACCAACTGATGAAGCAAGAGATGGGAGCAAAGAGGGAGAACAATGTTCTGGTGATTCAATAAGTGAGAATGAAATTTCAGGTGTTCATAAAGAGGAAGAAGCCACGGAAACGAATAGGCAAGATGAGAGGCCAGGCAAACAACGTTTGTTGGTGGTAGCTAACAGGTTGCCAGTTTCTGCTGTAAGAGATGGTGTGGAGTCATATCATCTTGAGATCAGTGTAGGAGGGCTAGTCAGTGCACTTCTAGGCAAGAAAAAATCTAATAGAGGTTGTATGAAGCTTGTTGTTTCTGTTGAAGGTGTAAAGGAGTTTGATACCAGATGGATTGGGTGGGCTGGCGTGAATGTGCCTGATGAGGTTGGACGGAGAGCATTGACTAAAGCTTTGGCTGAAATGCGGTGTATTCCAGTATTTCTTGATGAGGAGATAGTTAATCAGTACTATAATGGCTACTGCAACAACATCTTGTGGCCTCTATTTCATTACCTTGGGCTTCCACAAGAAGATCGACTTGCTACCACTCGTACTTTCCAATCCCAATTTGATGCATATAAGACGGCAAACCAAATCTTTGCTGATGTAGTAAATATGCATTATGAGGAAGGAGATGTTGTTTGGTGCCATGATTACCACCTAATGTTCCTTCCAAAATGTTTAAAGGAGCGCAACGACAAAATGAAAGTTGGTTGGTTTCTCCATACACCCTTTCCTTCCTCAGAAATACATAGGACTCTACCATCCAGAACAGAGCTGTTGAGATCAGTCATTGAAGCTGACCTTGTGGGATTCCATACCTATGATTATGCAAGGCATTTTGTTAGTGCTTGTACTCGTATTCTTGGGCTTGAGGGCACACCTGACGGAGTAGAAGATCGAGGGAAGCTAACCCGTGTGGCTGCGTTTCCTATTGGGATTGACTCTGAGAGATTCATTCAAGCCCTTGAACTCCCTGAAGTCCAGGCGCACATGAAAGAACTGAAAGAAAGATTTGCAGGCCGAAAGGTAATGTTGGGCGTCGATCGTCTTGATATGATAAAAGGAATTCCTCAGAAAATATTGGCATTCGAAAAGTTCCTCGAGGAGAATTCCCACTGGCGTGATAAAGTTGTCTTGCTGCAAATTGCTGTACCTACTAGAAAAGATGTTCCTGAATACCAAAGGCTTGCAAGCCAAGTGCATGAGATTGTAGGACGCATCAATGGAAGATTTGGAACACTTACAGCTGTTCCACTACACCATCTGGATCGATCACTTGACTTTCATGAATTATGTGCACTCTATGCTGTAACCGACTTAAAGGAATATGAGAAGACCCACTCACCAAAGTTTGCTGGAGCAGCACAGTCTCTTGGTGCTGGTGCTATCTTGGTAAATCCTTGGAACATAACAGAGGTTGCTGCTTCTATTGGCTATGCATTGGATATGCCAGCCGATGAAAGAGAAAAACGGCATCAGTTTAATTTCAGACATGTGAAGACTCACACATCACAGGAATGGGCTGCAACTTTTGTGAGTGAACTAAATGATACCATTGTTGAAGCTCAACTCAGGACAAGACAAGATCCTCCATTGCTTCCCAACAAAGTGGCAGTTGACTGTTATAAAAAATCCAGTAACCGGTTAATCATACTGGGTTTCAATGCCACTTTGACTGAGCCAGTGGATGCCCTTGGACGGGCTGGTCAAATTAGAGAACTGGAACCTAAATTACACCCAAATCTGAAAGGACCTTTAAAGAAGTTATCCGATGATCCACAGACAACGATAGTACTTCTCAGTGGGAGCAATCGAGAAGTCCTGGACAAAAACTTCAGTGAATTTAATATGTGGTTGGCAGCGGAAAATGGGATGTTTCTGCGACTCACTTCAAGTGAGTGGATGACAACCATGCCTGAAAATTTAAACATGGATTGGGTTGATAGCGTGAAGCATGTTTTTGAGTATTTTACTGAAAGGACTCCCCGGTCTCATTTTGAGCTTAGGGAGACTTCAATAGTATGGAATTACAAGTACGCAGATGTTGAATTTGGAAAGATTCAAGCAAGAGATTTGCTTCAGCATCTGTGGACAGGACCAATATCAAATGCATCTCTTGATGTTGTCCAAGGTGGTCGATCAGTTGAGGTGCGCACAGTTGGCGTGTCAAAGGGAGCAGCTATTGATCGTATCCTTGGAGAGATAGTTCATAACAAAGGCATGACGGCACCAATTGACTATGTCCTATGCATTGGGCACTTTCTAGCCAAGGACGAAGATGTTTATAAATTTTTTGAGCCAGAGCTTCCTTGTGAATCACCTTCAGTACCAAGAGCTATGCTATCCAAATCCAAGTCATACAGACCATCATCTTTGCTAAAATTTGCAGCCAACAAAGCCGGGACAAACGCTGCTCAGTACAAGAAACAACGTTCGTTGTCAAGCATAGAAAAGAGAGAAATTGAACTGAGAGCAACATATCGTGATAGAATATCACAGCATGAAGGTTCCTCGGTGCTTGATCTAAAAGGTGATAATTACTTCTCTTGTGTTGTTGGACGGAAAAGATCAAGTGCACGTTACCATCTTAAAACCTCAGATGATGTAGTCAACCTCTTAAGTGACTTGGCAGAACATTCTTCATCAACAACTTAG 2808 0.4266 MRNIAIMYLPDGIKQVKRLDILESKRLPANNYNCVPLTPRSRLERLLRERELRKSFKNQPTDEARDGSKEGEQCSGDSISENEISGVHKEEEATETNRQDERPGKQRLLVVANRLPVSAVRDGVESYHLEISVGGLVSALLGKKKSNRGCMKLVVSVEGVKEFDTRWIGWAGVNVPDEVGRRALTKALAEMRCIPVFLDEEIVNQYYNGYCNNILWPLFHYLGLPQEDRLATTRTFQSQFDAYKTANQIFADVVNMHYEEGDVVWCHDYHLMFLPKCLKERNDKMKVGWFLHTPFPSSEIHRTLPSRTELLRSVIEADLVGFHTYDYARHFVSACTRILGLEGTPDGVEDRGKLTRVAAFPIGIDSERFIQALELPEVQAHMKELKERFAGRKVMLGVDRLDMIKGIPQKILAFEKFLEENSHWRDKVVLLQIAVPTRKDVPEYQRLASQVHEIVGRINGRFGTLTAVPLHHLDRSLDFHELCALYAVTDLKEYEKTHSPKFAGAAQSLGAGAILVNPWNITEVAASIGYALDMPADEREKRHQFNFRHVKTHTSQEWAATFVSELNDTIVEAQLRTRQDPPLLPNKVAVDCYKKSSNRLIILGFNATLTEPVDALGRAGQIRELEPKLHPNLKGPLKKLSDDPQTTIVLLSGSNREVLDKNFSEFNMWLAAENGMFLRLTSSEWMTTMPENLNMDWVDSVKHVFEYFTERTPRSHFELRETSIVWNYKYADVEFGKIQARDLLQHLWTGPISNASLDVVQGGRSVEVRTVGVSKGAAIDRILGEIVHNKGMTAPIDYVLCIGHFLAKDEDVYKFFEPELPCESPSVPRAMLSKSKSYRPSSLLKFAANKAGTNAAQYKKQRSLSSIEKREIELRATYRDRISQHEGSSVLDLKGDNYFSCVVGRKRSSARYHLKTSDDVVNLLSDLAEHSSSTT 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03368 935 CDD HAD_TPP 600 819 - -
Vian1g03368 935 Gene3D Glycogen Phosphorylase B; 553 563 - -
Vian1g03368 935 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 99 370 - -
Vian1g03368 935 CDD GT20_TPS 107 567 IPR001830 GO:0003824|GO:0005992
Vian1g03368 935 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 94 491 IPR001830 GO:0003824|GO:0005992
Vian1g03368 935 Gene3D Glycogen Phosphorylase B; 98 370 - -
Vian1g03368 935 Pfam Trehalose-phosphatase 629 841 IPR003337 GO:0003824|GO:0005992
Vian1g03368 935 MobiDBLite consensus disorder prediction 52 72 - -
Vian1g03368 935 SUPERFAMILY HAD-like 600 927 IPR036412 -
Vian1g03368 935 MobiDBLite consensus disorder prediction 83 105 - -
Vian1g03368 935 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 691 771 - -
Vian1g03368 935 Gene3D - 628 785 IPR023214 -
Vian1g03368 935 Gene3D Glycogen Phosphorylase B; 371 492 - -
Vian1g03368 935 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 106 570 - -
Vian1g03368 935 MobiDBLite consensus disorder prediction 52 105 - -
Vian1g03368 935 Pfam Glycosyltransferase family 20 501 567 IPR001830 GO:0003824|GO:0005992
Vian1g03368 935 Pfam Glycosyltransferase family 20 107 491 IPR001830 GO:0003824|GO:0005992
Vian1g03368 935 Gene3D Glycogen Phosphorylase B; 501 552 - -
Vian1g03368 935 Gene3D - 691 771 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03368 Vian-Chr1 56013971 56024238 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03368 27 933 Trehalose Biosynthesis Gene Families AT1G78580 68.894 0.0 1293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03368 K16055 - gmx:100816642 1541.55