LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian1g03364	ATGGCTTTTCCAAACCAATCCATGTCATCGGTTTCTCCCGAGAGAAAGATGGGAAGGGGGAAGATTGAGATCAAGAGGATTGAGAACACCACCAGTCGACAAGTTACCTTCTGCAAGCGCAGAAATGGCTTGCTCAAGAAGGCATATGAGTTATCTGTGCTTTGTGATGCAGAGGTTGCTCTCATAGTCTTTTCAAACCGTGGCCGCCTCTATGAATATGCTAATAACAGTGTCAAAGCTTCAATTGAGAGATACAAGAAAGCAAGTTCAGATTCATCTAACGGTGGATCTGCTTCTGAGGCTAATGCTCAGTTTTACCAGCAAGAAGCTGCCAAACTGCGAGTTCAAATCAGCAATCTGCAGAATCACAATAGGCAAATGATGGGTGAGGCTTTGAGCGATATGGATGCCAAGGATCTCAAAAACCTAGAGACTAAATTAGAAAAAGGAATTAGCAGAATTCGATCAAAGAAGAATGAGCTGCTATTTGCAGAAATTGAGTACATGCAAAAGAGGGAGACAGACTTGCACAATAACAACCAGCTTCTTAGAGCAAAGATGGCAGAAAGGGAAAGGAGTGAGCATAATGTTAACGTGTTGTCTGGAAGCACAAGCTACGAATCAATGCAATCTCAGTTTGATTCTCGTGGCTTCTTCCAAGTCACTGGATTACAACCCAATAATAACCAGTATGCTGGACAAGACCACATGTCCCTCCAATTTGTTTGA	729	0.4266	MAFPNQSMSSVSPERKMGRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYANNSVKASIERYKKASSDSSNGGSASEANAQFYQQEAAKLRVQISNLQNHNRQMMGEALSDMDAKDLKNLETKLEKGISRIRSKKNELLFAEIEYMQKRETDLHNNNQLLRAKMAERERSEHNVNVLSGSTSYESMQSQFDSRGFFQVTGLQPNNNQYAGQDHMSLQFV	242

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian1g03364	242	ProSiteProfiles	MADS-box domain profile.	17	77	IPR002100	GO:0003677\|GO:0046983
	Vian1g03364	242	Pfam	K-box region	100	187	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Vian1g03364	242	MobiDBLite	consensus disorder prediction	1	20	-	-
	Vian1g03364	242	CDD	MADS_MEF2_like	18	94	IPR033896	GO:0000977\|GO:0045944
	Vian1g03364	242	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	17	195	-	-
	Vian1g03364	242	FunFam	agamous-like MADS-box protein AGL11	29	112	-	-
	Vian1g03364	242	ProSiteProfiles	K-box domain profile.	103	193	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Vian1g03364	242	Coils	Coil	140	160	-	-
	Vian1g03364	242	Coils	Coil	103	130	-	-
	Vian1g03364	242	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	26	73	IPR002100	GO:0003677\|GO:0046983
	Vian1g03364	242	SMART	madsneu2	17	76	IPR002100	GO:0003677\|GO:0046983
	Vian1g03364	242	ProSitePatterns	MADS-box domain signature.	19	73	IPR002100	GO:0003677\|GO:0046983
	Vian1g03364	242	SUPERFAMILY	SRF-like	18	90	IPR036879	GO:0003677\|GO:0046983
	Vian1g03364	242	PRINTS	MADS domain signature	39	54	IPR002100	GO:0003677\|GO:0046983
	Vian1g03364	242	PRINTS	MADS domain signature	19	39	IPR002100	GO:0003677\|GO:0046983
	Vian1g03364	242	PRINTS	MADS domain signature	54	75	IPR002100	GO:0003677\|GO:0046983
	Vian1g03364	242	Gene3D	-	29	97	IPR036879	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian1g03364	Vian-Chr1	55947795	55953260	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian1g03364	15	242	MADS-box Gene Family	AT3G58780	64.407	1.42e-103	299

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Vian1g03364		K-box	3.8e-27	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian1g03364	K09264		-	gmx:100776263	410.994

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vian1g03364	1	55947795	55953260	Vian1g03364	1	55947795	55953260	ECH
	Vian1g03364	1	55947795	55953260	Vian6g01618	6	33718966	33726761	PCT