Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03357 ATGCTACCTAGGATACTGTTTGCTTTCTTACTCTTTACTCCGAGTTGTTTCAGATGGCTAGAATATGCAGAATGCAAAGTTCCCCAAGAGGAGGTTGATGCTCTTAAGGAAATCACTAGCACGATGGGGGCCACCTATTGGGAGTTTGACAGTGATTATTGTTCTGTTAAAATGCTGAGATCAACACCAGATCCACCTAAAGAATCTGAAAGGAAAATTGTTTGTGATTGCTCTATTGAAAACAACACCTGTCACGTAGTAGAGATCCTTTTCAAGAAGGTCAACCTTCCTGGCATGCTTCCACCTCAATTGGTTAAGCTTCCTTACCTCAGCAAAGTTGATTTTGCTTTCAACTACCTAAGTGGTACGATTCCGAAGGAATGGGGTTCGACAAATTTAACTTCAATCTCTGTATTTGCTAATCATTTGTCAGGGGAAATTCCTATAGAGTTGGGAAGAATTACCACTCTAACATACCTGAACCTTGAAGCAAACCAATTTTCTGGTGTTGTTCCCCACGAACTTGGAAGTCTATTTAAGCTGGAACTATTGGTTTTATCGTCCAATAATTTTTCTGGGAAGTTACCGGTGACACTTGCTAAGTTGCAGAATATGACAGAATTCAGGATAAGTGACAACAATTTTAGCGGAGAAATACCTAGCTTCTTCATACAGAATTGGAAATATCTTCAAAGATTAGACATGCTTGCAAGTGGACTGGAGGGACCTATCCCATCAAATATATCTCTTTTGAGTAATTTATATCAATTGAGGATTAGTGACATAAATGGTCCAAGTCAGGATTTTCCCAATTTAATCAACATGACACGAATGAAAATACTGATTTTGAGAAACTGCCATATTATTGGAGTTCTTCCAAGCTACTTGTGGAGTATGGAGAAATTGGAGATGTTGGACGTGAGTTTCAATAAGTTGGTTGGGAAAATACCAGATGCTCGACATGCAGGGTATCTGAGATTTCTCTTCCTAACTCACAACATGCTAAGTGGAAATATTCCCAAGTCAGTCTTGACGGATGGAAGCAGCGTTGATCTTTCTTACAACAATTTTACGTGGCAAGGACCAGATGAACCTGCTTGTAGAGATAACCTAAATTTAAACTTAAACTTGTTCCGGAGCTTCTTCGGGACCAAATTACAGCAGATTCTTCCCTGTTTAGAGATCTCCAATTGTCCTGCATATTCACATTGTTTTCGTATTAACTGTGGTGGAAAGGATGTAAATGTGATGGAAAATGATGAAAATGTTCTCTATGTAGGAGATGGAGATGTGTTAGGTAGTGAAGCTGCTAAATATTATATTAATTATAAAAGTCACTGGGGATTTAGCAGCACTGGGGACTTCATGGATGATGGCAATTACCTAAATGCTCATTTTACTAGGGCTTTGACATCTTCAAATTTGCCTGAACTATATCAAACGGCACGTGTTGCTCCACTTTCGCTTACTTATTTTCTCTATTGCTTGGAAAATGGGAAATATACTGTAAAACTCCACTTCGCAGAAATACAATTTACAAACGATAAGACATATAGTAGTCTTGGGAAGCGCTTATTTGATATCTATATTCAGGAAAAATTAGTTAGGAAGGATTTTAATATTGAAGATGAAATTCATGGTCCTCAAAAACCACTTACTTTCCCATATAATGTCAGTGTAACAGAGAATATTCTGGAGATTCGATTCTATTGGGCTGGAAAGGGGACAACAAGGGTTCCTGGTGGTGGAGCTTATGGTCCTCTCATATCAGCACTCTCCATTGTTTCTCATTCCAAACCTTGTTCAGAACAAAAAAGTGCAAGGCGTATGATAATTGTTGGAGTTGGGTTTGGTGTTACCGCTCTGTGCCTTGTTATCATCATTGTTGGAATCTTTTGGTGGAATGGCTGCTTCAAAGGAATGATTAGGGCTGTAAAAGGTACTGAAAGACAAGATTCTAAAATGGGGACATTTACATTAGAACAAATTAGAGAGGCCACAGAGGATTTCAGTCCAGTTAACAAGATTGGAGAAGGTGGATTTGGTCCTGTATACAAGGGTCAATTATTTGATGGTACACTGGTAGCAGTCAAACAACTCTCATCAAAGTCACGACAGGGGAATCATGAATTTTTAAATGAGATAGGCTTGGTATCTTGTTTGCAACACCCTAATCTTGTGAAACTTCATGGATGTTGCATTGAAGGGAATCAATTAATGTTGGTGTATGAGTACATGGAAAATAATAGCCTGGCTCAAGCTTTGTTCAGCTCAAAAGATCAACTTAATCTTGATTGGCCAACAAGGCTTAGGATCTGTATTGGCATAGCAAAAGGTCTTGCATTTCTTCACGAAGAATCAAGACTCAAGATTGTTCATCGAGACATCAAGGCTACTAATGTGTTACTGGATGGGAATTTAAACCCCAAAATATCAGACTTTGGGTTGGCTAGGCTTGATGATGAAGAGAAGACCCATATCACCACCCGAATAGCTGGAACAATAGGGTACATGGCACCGGAATATGCATTATGGGGTCGCTTGTCTTACAAGGCTGATGTTTACAGTTATGGGGTTGTGGTCTTGGAAGTTGTTAGTGGGAAGAGCAATAACAATTACATGCCTAGTGATAATCGTGTTTGCCTTTTAGACAAGGCATGTCATCTACAGCGTACTGAAAGCTTAATAGAACTGGTGGATGAAAGGTTGGGATCAGAGATAAAACCAACAGAAGCAATAATTTTGATGAAAGTTGCTCTTCTGTGCACGGATGTATCACCTTCACATAGGCCTACAATGTCTGAGGTTGTAAGGATGCTCGAAGGAAGAGCAAGAATTCCAGATAAAATCCCACAGTCAAGTGACTTTAGTGAAGATATAAGGTTTAAATCCATGAGGGATATCTATCAGCAAAGGGAAAACCACAGTTTAAGTTCAAGTCAATTAGACAATTCAACAGGAGTTCTCACACTTACCTCGCCTTAA 2985 0.3913 MLPRILFAFLLFTPSCFRWLEYAECKVPQEEVDALKEITSTMGATYWEFDSDYCSVKMLRSTPDPPKESERKIVCDCSIENNTCHVVEILFKKVNLPGMLPPQLVKLPYLSKVDFAFNYLSGTIPKEWGSTNLTSISVFANHLSGEIPIELGRITTLTYLNLEANQFSGVVPHELGSLFKLELLVLSSNNFSGKLPVTLAKLQNMTEFRISDNNFSGEIPSFFIQNWKYLQRLDMLASGLEGPIPSNISLLSNLYQLRISDINGPSQDFPNLINMTRMKILILRNCHIIGVLPSYLWSMEKLEMLDVSFNKLVGKIPDARHAGYLRFLFLTHNMLSGNIPKSVLTDGSSVDLSYNNFTWQGPDEPACRDNLNLNLNLFRSFFGTKLQQILPCLEISNCPAYSHCFRINCGGKDVNVMENDENVLYVGDGDVLGSEAAKYYINYKSHWGFSSTGDFMDDGNYLNAHFTRALTSSNLPELYQTARVAPLSLTYFLYCLENGKYTVKLHFAEIQFTNDKTYSSLGKRLFDIYIQEKLVRKDFNIEDEIHGPQKPLTFPYNVSVTENILEIRFYWAGKGTTRVPGGGAYGPLISALSIVSHSKPCSEQKSARRMIIVGVGFGVTALCLVIIIVGIFWWNGCFKGMIRAVKGTERQDSKMGTFTLEQIREATEDFSPVNKIGEGGFGPVYKGQLFDGTLVAVKQLSSKSRQGNHEFLNEIGLVSCLQHPNLVKLHGCCIEGNQLMLVYEYMENNSLAQALFSSKDQLNLDWPTRLRICIGIAKGLAFLHEESRLKIVHRDIKATNVLLDGNLNPKISDFGLARLDDEEKTHITTRIAGTIGYMAPEYALWGRLSYKADVYSYGVVVLEVVSGKSNNNYMPSDNRVCLLDKACHLQRTESLIELVDERLGSEIKPTEAIILMKVALLCTDVSPSHRPTMSEVVRMLEGRARIPDKIPQSSDFSEDIRFKSMRDIYQQRENHSLSSSQLDNSTGVLTLTSP 994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03357 994 Gene3D Phosphorylase Kinase; domain 1 640 745 - -
Vian1g03357 994 ProSitePatterns Serine/Threonine protein kinases active-site signature. 791 803 IPR008271 GO:0004672|GO:0006468
Vian1g03357 994 Gene3D - 402 599 - -
Vian1g03357 994 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 265 385 - -
Vian1g03357 994 SMART serkin_6 670 940 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03357 994 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 196 263 - -
Vian1g03357 994 Gene3D Ribonuclease Inhibitor 266 381 IPR032675 -
Vian1g03357 994 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 33 195 - -
Vian1g03357 994 Gene3D Ribonuclease Inhibitor 196 265 IPR032675 -
Vian1g03357 994 CDD STKc_IRAK 676 942 - -
Vian1g03357 994 Gene3D Ribonuclease Inhibitor 33 195 IPR032675 -
Vian1g03357 994 Gene3D Transferase(Phosphotransferase) domain 1 746 958 - -
Vian1g03357 994 ProSiteProfiles Protein kinase domain profile. 670 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03357 994 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 402 597 - -
Vian1g03357 994 Pfam Protein tyrosine and serine/threonine kinase 674 940 IPR001245 GO:0004672|GO:0006468
Vian1g03357 994 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 640 745 - -
Vian1g03357 994 Pfam Malectin domain 404 592 IPR021720 -
Vian1g03357 994 SUPERFAMILY Protein kinase-like (PK-like) 655 941 IPR011009 -
Vian1g03357 994 FunFam Putative LRR receptor-like serine/threonine-protein kinase 746 952 - -
Vian1g03357 994 SUPERFAMILY L domain-like 53 340 - -
Vian1g03357 994 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 13 976 - -
Vian1g03357 994 MobiDBLite consensus disorder prediction 973 994 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03357 Vian-Chr1 55829520 55843243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03357 6 835 Receptor kinase-like Gene Family AT1G29750 58.802 0.0 991
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vian1g03357 PK_Tyr_Ser-Thr 1.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03357 - - mtr:11406167 1410.2