Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03354 ATGGACGAGAATTCAACAACAAACCACGAGGTGGTATTAGATGTAAACAAGGATGTCTCTAGAACAACTGAAGACTCACGCTCCTGTCTCAATGTTTCTTTCTTGCAAAAGTTGGTGGCTGAGGTGGTGGGCACGTATTTCTTGATATTCGCAGGGTGTGCTGCAGTGGTTGTAAACAAGAACAACGACAACGTGGTAACACTTCCTGGGATATCAATTGTTTGGGGACTAGTCGTGATGGTGCTGGTTTACTCGGTTGGTCACATCTCTGGTGCCCATTTCAATCCTGCTGTCACCATTGCCTTTGCCTCCACCAAAAGGTTTCCCTGGAAGCAGGTACCAGTTTATGTCGTAGCACAGGTTGTTGGATCCACACTTGCAAGTGGGACTCTCAGACTAATATTCAGTGGCAATGAGAACCAGTTTTCAGGAACACTTCCATCTGGGACTCACGCCCAAGCTTTTGCGGTTGAATTCATTATCACGTTTTTCCTTATGTTTGTCATATCTGGGGTGGCCACCGATAACAGAGCGATCGGTGAGTTGGCTGGGATTGCCGTTGGGGCCACTGTGCTGTTGAATGTGTTGTTTGCAGGACCGATCACAGGAGCATCAATGAACCCAGCAAGAAGCTTAGGCCCTGCATTAGTGCACAATGAATTCAAAGGAATATGGATATATTTAGTGTCTCCAACATCTGGGGCTGTGGTTGGTGCATGGGTTTATAACAGTATTCGTTACACAGATAAGCCACTGCGTGAGATCACCCAAAGTGCGTCTTTCCTCAAAGGAAAAGGGCATAGTGGTGGCTCTAGATGA 819 0.4676 MDENSTTNHEVVLDVNKDVSRTTEDSRSCLNVSFLQKLVAEVVGTYFLIFAGCAAVVVNKNNDNVVTLPGISIVWGLVVMVLVYSVGHISGAHFNPAVTIAFASTKRFPWKQVPVYVVAQVVGSTLASGTLRLIFSGNENQFSGTLPSGTHAQAFAVEFIITFFLMFVISGVATDNRAIGELAGIAVGATVLLNVLFAGPITGASMNPARSLGPALVHNEFKGIWIYLVSPTSGAVVGAWVYNSIRYTDKPLREITQSASFLKGKGHSGGSR 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03354 272 PANTHER AQUAPORIN NIP2-1 20 262 IPR034294 -
Vian1g03354 272 SUPERFAMILY Aquaporin-like 29 256 IPR023271 -
Vian1g03354 272 PRINTS Major intrinsic protein family signature 188 210 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian1g03354 272 PRINTS Major intrinsic protein family signature 157 175 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian1g03354 272 PRINTS Major intrinsic protein family signature 225 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian1g03354 272 PRINTS Major intrinsic protein family signature 75 99 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian1g03354 272 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian1g03354 272 PRINTS Major intrinsic protein family signature 112 131 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian1g03354 272 Pfam Major intrinsic protein 31 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian1g03354 272 CDD MIP 36 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian1g03354 272 ProSitePatterns MIP family signature. 93 101 IPR022357 -
Vian1g03354 272 Gene3D Glycerol uptake facilitator protein. 1 258 IPR023271 -
Vian1g03354 272 NCBIfam MIP family channel protein 40 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03354 Vian-Chr1 55809418 55811314 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03354 23 271 Major Intrinsic Protein MIP AT5G37810 60.159 2.27e-106 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03354 K09874 - gmx:100794883 456.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03354 1 55809418 55811314 Vian1g03354 1 55809418 55811314 ECH
Vian1g03354 1 55809418 55811314 Vian6g01635 6 33898226 33900291 PCT