Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03353 ATGGCTGATTATTCAGGAGGATCTGAAACACACGAGGTAGTTGTCAATGTAACCAAGGACACCCCAAAAACTGTGGAACGCTCCGACTCCTTTGTCTCTGTTCCTTTCTTGCAGAAGTTGATAGCCGAGGTGGTGGGCACATATTTCTTGATATTCGCAGGGTGTGCTGCAGTGGTTGTAAACAAGAACAACGACAAGGTGGTAACACTTCCTGGGATAGCAATTGTTTGGGGGCTGGTTGTGACAGTGCTGGTTTACTCTGTTGGTCACATCTCTGGTGCCCATTTCAACCCTGCTGTCACCATTGCCTTTGCTTCCACCAAAAGGTTTCCCTTGACGCAGGTACCAGCTTATGTTGCAGCTCAACTGCTAGGAGGCACACTTGCAAGTGGAACTCTGAAGCTGTTGTTTATGGGAAAGCATGACCAGTTTTCAGGAACACTTCCAACTGGAACTGATCTGCAAGCTTTTGTGTTTGAATTCATAATCACATTTCTCCTAATGTTTGTCATATCAGGGGTTGCCACTGATAACAGAGCGATTGGTGAGTTGGCTGGGATTGCAATTGGGTCTACAATACTGCTGAACGTGATCATTGGAGGGCCAGTGACAGGAGCATCAATGAACCCTGTGAGAAGCCTTGGACCTGCTTTTGTGCACTCAGAATACAGAGGAATATGGATATTCATTTTGGCACCAATTCTTGGAGCTGTGGCTGGAGCATGGGTCTACAATATCATTCGGTACACAGATAAGCCACTGCGTGAGATCACCAAGAGTGCCTCTTTTCTCAAAGGACGTACTGGTGCCACCAAATAG 819 0.4676 MADYSGGSETHEVVVNVTKDTPKTVERSDSFVSVPFLQKLIAEVVGTYFLIFAGCAAVVVNKNNDKVVTLPGIAIVWGLVVTVLVYSVGHISGAHFNPAVTIAFASTKRFPLTQVPAYVAAQLLGGTLASGTLKLLFMGKHDQFSGTLPTGTDLQAFVFEFIITFLLMFVISGVATDNRAIGELAGIAIGSTILLNVIIGGPVTGASMNPVRSLGPAFVHSEYRGIWIFILAPILGAVAGAWVYNIIRYTDKPLREITKSASFLKGRTGATK 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03353 272 NCBIfam MIP family channel protein 42 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian1g03353 272 Gene3D Glycerol uptake facilitator protein. 5 259 IPR023271 -
Vian1g03353 272 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian1g03353 272 PRINTS Major intrinsic protein family signature 77 101 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian1g03353 272 PRINTS Major intrinsic protein family signature 190 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian1g03353 272 PRINTS Major intrinsic protein family signature 227 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian1g03353 272 PRINTS Major intrinsic protein family signature 114 133 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian1g03353 272 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian1g03353 272 Pfam Major intrinsic protein 32 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian1g03353 272 PANTHER AQUAPORIN NIP2-1 29 264 IPR034294 -
Vian1g03353 272 CDD MIP 38 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian1g03353 272 ProSitePatterns MIP family signature. 95 103 IPR022357 -
Vian1g03353 272 SUPERFAMILY Aquaporin-like 32 258 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03353 Vian-Chr1 55800616 55802478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03353 34 272 Major Intrinsic Protein MIP AT5G37810 58.996 5.46e-102 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03353 K09874 - gmx:100813448 471.855