Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03352 ATGGATGAGGCACTGGGTAGTTCATGTTCCCTGCCCCCTTTCCTGGCGAAGACTTATGAGATGGTTGATGATCCTTCCACGAATTCAATTGTTTCGTGGAGTGCCTCTAGTAAAAGTTTCGTTGTGTGGAATCCTCCAGAATTTGCTAGGGATTTGCTGCCTAGATTCTTTAAGCACAACAATTTCTCAAGTTTCATCAGGCAGCTCAACACATATGGATTTAGAAAAATTGACCCGGAACAATGGGAATTTGCCAATGATGATTTTGTAAGAGGGCAACCTCATCTTATGAAGAACATTCATAGACGGAAGCCGGTTCATAGCCATTCTTTGCAGAATCTCCAAGCACAGGGCCCATTAGGGGAATCAGAAAGGCAGAGTTTTACTAATGAAATAGAGAAGCTTAAACATGATAAAGAGCGACTTCTAGCCGAATTGCAGAAATTTCAGCATGAGTGGCAGACATATGAGATACAAGTACATTGCTCAAACGATAGGTTGGAAAAGTTAGAACAAAAGCAACACAAGATGGTTTCTTCGGTTTCTCACGTATTGCAGAAACCTGTGATTGCTGTAAATATCTTGCCTCTGACAGAAACTATGGATAGAAAACGAAGGTTACCGAGAAGTGGCCACTACTATGAAGAAGCTAGTATTGAAGATGCTATTGAAACTTCTCAAATGTTACCAAGAGAAAATGGAGATAATACCACTGTCTTGACATTAAATGTGGATCGATTGGATCAGCTTGAATCATCCGTGGCATTTTGGGAGGCTATTGCACATGATATTGGAGACAACTTCGCCCAAATTCAGTCAAACATGGATGTTGATGAATCTAGAAGTTGTGCTGATAGTCCATCCATATCTTGTGCCCAATTAGATGTTGAAATTCGGCCTAAATCATCTGGAATTGATATGAACTCTGAGCCAACTGTAGCTGCTGTCCCAGAGCCAGTTGCATCAAAAGATCAACCTGCAGGAATCACTGTCGCAGCGACTGGAGTTAATGATGTATTCTGGGAACAGTTCTTGACAGAGGATCCTGGGGCATCAGAAACACAGGAAGTGCAGTCAGAAAGAAAGGATTCTGATGGCAGAAAGAATGAAGGAAAACCCAATGACCTTAGCAAATTTTGGTGGAATATACGGAGTGCAAATACTCATTCAGAACCGATGGGGCATGTTGGTCAGGCAGAGAAAACTTAG 1209 0.4185 MDEALGSSCSLPPFLAKTYEMVDDPSTNSIVSWSASSKSFVVWNPPEFARDLLPRFFKHNNFSSFIRQLNTYGFRKIDPEQWEFANDDFVRGQPHLMKNIHRRKPVHSHSLQNLQAQGPLGESERQSFTNEIEKLKHDKERLLAELQKFQHEWQTYEIQVHCSNDRLEKLEQKQHKMVSSVSHVLQKPVIAVNILPLTETMDRKRRLPRSGHYYEEASIEDAIETSQMLPRENGDNTTVLTLNVDRLDQLESSVAFWEAIAHDIGDNFAQIQSNMDVDESRSCADSPSISCAQLDVEIRPKSSGIDMNSEPTVAAVPEPVASKDQPAGITVAATGVNDVFWEQFLTEDPGASETQEVQSERKDSDGRKNEGKPNDLSKFWWNIRSANTHSEPMGHVGQAEKT 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03352 402 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian1g03352 402 SUPERFAMILY "Winged helix" DNA-binding domain 10 103 IPR036390 -
Vian1g03352 402 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian1g03352 402 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 7 220 IPR027725 -
Vian1g03352 402 MobiDBLite consensus disorder prediction 347 378 - -
Vian1g03352 402 Gene3D - 7 104 IPR036388 -
Vian1g03352 402 FunFam Heat shock transcription factor 1 7 104 - -
Vian1g03352 402 MobiDBLite consensus disorder prediction 354 374 - -
Vian1g03352 402 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian1g03352 402 Coils Coil 125 152 - -
Vian1g03352 402 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian1g03352 402 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian1g03352 402 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03352 Vian-Chr1 55687139 55688473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03352 7 402 HSF AT4G18880 52.683 1.39e-123 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vian1g03352 HSF_DNA-bind 9e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03352 K09419 - gmx:100798004 731.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03352 1 55687139 55688473 Vian1g03352 1 55687139 55688473 ECH
Vian6g01642 6 33964317 33965613 Vian1g03352 1 55687139 55688473 ECH
Vian1g03352 1 55687139 55688473 Vian6g01642 6 33964317 33965613 PCT