Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03349 ATGGCTTCAGCGGCTATATTTTCGTCGCTTCGACGGCGCCGGTCGCCATCGCTGGAGGCGTTTCTTGTGCCAGTTGACCTCTCTGAGGTGGCGCTGCTGGAGACACTTATCTCCGTCTCCGGAGACGTCGTATCCTGCTTCTCCGACAATCGGTTCCCCTTCCAGCGCCGGAACTCGCGTGCCCTCGTAGGAAAAGTAGAGATTTTCCGGTCAATGTTAGAGTGCTTGAGAGACTCTGCTGACGGTGGCGTTCTAACCCCCACGGCGGTGCTGTGCTTAAAGGAGCTTTATTTGCTACTGTATCGCTCTAAGATTCTTCTTGATTACTGTGCCCGATCGAGCAAGCTGTGGCTCTTGCTTCAGAACCATTGTGTGTCTGGTCACTTCCATGACTTGTGTCAAGAATTTTCGACCCTTTTGGATGTTTTTCCCGTTGGAGAGATTGGACTCAGTGATGACGTTAGGGAACAGGTTGAGTTGTTGCAGAGACAGTCCAAAAGGGCTAAGTTGTTCGTAGATAAGAAAGATGACGCCCTTAGGATAAGGTTCTTTTGGTTTCTGAATGAATTTGAAAGTGGGAGGGTTCCTGATTCTAAGGACTTGAGGTGTTTCTTTGTTGATAAGTTGCAGATGCTCGATGCTAAGAGTTGTAGGGTGGAGGTTGAGGCCTTGGAGGAGCAGATTGTGAACCACGAGGGTGATGTTGAGCCAACAGTTCCTGTGCTTAATGGGATGGTGGCTATCACAAGGTATTGTAGGTTTTTGTTATTTGGGTTTGAGGAAGAATTGGAAGTTGAAAGTCAGAAGAGAGCGAGGAAGAGGTTGATTACCCAGGAAATTGCGGAAACGTTTTTTACGGTTCCTAAGGACTTTTGCTGTCCGATAACCTTGGACTTGATGTGTGATCCTGTAATAATTTCTACTGGTCAAACTTATGATAGGAGGTCTATATGGAGGTGGATGGAGGAGGGGCATTGCACTTGTCCCAAAACTGGGGTACTGCTTTCTCATAACAGGCTTGTTCCTAATCGTGCTCTTAGGAATTTGATTATGCAATGGTGCAGCGCACATGGAGTACCCTATGATCCACCTGAGGGGGTTGATCCATCAGTTGAGATGTTTGCATCAGCTTGTCCCTCCAAAGCTTCCCTTGTAGCTAACCGAGAGACGGCCATGCTTCTCATTCAGCAGCTTGCTGATGGGTCGCAAGTTGCAAAGACTGTGGCTGCCAGGGAGATAAGATTGCTGGCCAAAAATGGAAAGGAAAACCGTGCCTTCATTGCGCAAGCTGGGGCAATTCCTCATCTTAGGAAGTTGCTTTCCTCTCCTAATGCTGTTGCACAGGAGAATTCTGTGACTGCACTGCTCAATCTGTCCATTTTTGAAAGAAATAAGAGTATGATCGTGGAGGAAGGGTGTTTGGGGTCAATTGTTGAGGTGTTGCAATTCGGGCACACGACTGAGGCAAGGGAGAATGCTGCTGCAACATTGTTCAGCCTATCTGCTGTCCACGAGTATAAGAAACAAATTGCGGATAATGTGGGAGCTGTTGAAGCATTGGCATGGTTGTTGCAAGAGGGAACTCAAAGGGGGAAGAAGGATGCTGTCACAGCATTATTTAATCTCTCCACCCATACTGAGAATTGTTTGAGAATGATAGAGGCAGGGGCAGTGAAAGCTATGGTCTTGGCTTTGGGGAATGAAGGAGTTTCCGAGGAAGCAGCTGGTGCCTTGGCCTTGATTGTTCGGCAGCCTATTGGCGCCATGGCAGTTGTGAGGGAGGAAGCAGCAGTAGGTGGATTGATAGGAATTATGCGTTGTGGAACGCCAAGAGGTAAAGAGAATGCAGTTGCAGCTTTGCTGGAGCTGTGCAGGAGTGGTGGTGCAGCGGCAACTGAGAGGGTGGTTAGGGCGCCTGCCTTGGCCGGCTTGCTTCAAACCTTACTTTTCACAGGGACAAAGAGGGCAAGAAGAAAGGCAGCTTCACTTGCTAGAGTGTTTCAGAGATGTGAAAATGCATCTCTGCATTATGGTGGATTGGGTGTGGGTTATGCATTTGCTAGCGATTCAGCTTCAACCAGGAATACTACAAGCTTTGTGAGTGATGTTTCACTTCCAATGTCCATTTCTGTTCCTGTTTTATGA 2145 0.4807 MASAAIFSSLRRRRSPSLEAFLVPVDLSEVALLETLISVSGDVVSCFSDNRFPFQRRNSRALVGKVEIFRSMLECLRDSADGGVLTPTAVLCLKELYLLLYRSKILLDYCARSSKLWLLLQNHCVSGHFHDLCQEFSTLLDVFPVGEIGLSDDVREQVELLQRQSKRAKLFVDKKDDALRIRFFWFLNEFESGRVPDSKDLRCFFVDKLQMLDAKSCRVEVEALEEQIVNHEGDVEPTVPVLNGMVAITRYCRFLLFGFEEELEVESQKRARKRLITQEIAETFFTVPKDFCCPITLDLMCDPVIISTGQTYDRRSIWRWMEEGHCTCPKTGVLLSHNRLVPNRALRNLIMQWCSAHGVPYDPPEGVDPSVEMFASACPSKASLVANRETAMLLIQQLADGSQVAKTVAAREIRLLAKNGKENRAFIAQAGAIPHLRKLLSSPNAVAQENSVTALLNLSIFERNKSMIVEEGCLGSIVEVLQFGHTTEARENAAATLFSLSAVHEYKKQIADNVGAVEALAWLLQEGTQRGKKDAVTALFNLSTHTENCLRMIEAGAVKAMVLALGNEGVSEEAAGALALIVRQPIGAMAVVREEAAVGGLIGIMRCGTPRGKENAVAALLELCRSGGAAATERVVRAPALAGLLQTLLFTGTKRARRKAASLARVFQRCENASLHYGGLGVGYAFASDSASTRNTTSFVSDVSLPMSISVPVL 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03349 714 ProSiteProfiles U-box domain profile. 286 360 IPR003613 GO:0004842|GO:0016567
Vian1g03349 714 SUPERFAMILY RING/U-box 276 361 - -
Vian1g03349 714 Coils Coil 214 234 - -
Vian1g03349 714 SUPERFAMILY ARM repeat 393 667 IPR016024 -
Vian1g03349 714 CDD RING-Ubox_PUB 288 340 IPR045210 -
Vian1g03349 714 Pfam U-box domain 287 357 IPR003613 GO:0004842|GO:0016567
Vian1g03349 714 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 361 IPR013083 -
Vian1g03349 714 Gene3D - 529 661 IPR011989 -
Vian1g03349 714 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 515 557 IPR000225 GO:0005515
Vian1g03349 714 FunFam RING-type E3 ubiquitin transferase 269 365 - -
Vian1g03349 714 Pfam Armadillo/beta-catenin-like repeat 421 459 IPR000225 GO:0005515
Vian1g03349 714 PANTHER U BOX DOMAIN-CONTAINING 58 670 - -
Vian1g03349 714 SMART Ubox_2 290 353 IPR003613 GO:0004842|GO:0016567
Vian1g03349 714 FunFam RING-type E3 ubiquitin transferase 363 683 - -
Vian1g03349 714 SMART arm_5 504 544 IPR000225 GO:0005515
Vian1g03349 714 SMART arm_5 420 460 IPR000225 GO:0005515
Vian1g03349 714 SMART arm_5 545 583 IPR000225 GO:0005515
Vian1g03349 714 SMART arm_5 461 502 IPR000225 GO:0005515
Vian1g03349 714 Gene3D - 366 528 IPR011989 -
Vian1g03349 714 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 431 473 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03349 Vian-Chr1 55662242 55664386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03349 1 714 U-box Gene Family AT1G29340 67.483 0.0 901
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03349 - - gmx:100797462 1272.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03349 1 55662242 55664386 Vian1g03349 1 55662242 55664386 ECH
Vian1g03349 1 55662242 55664386 Vian6g01644 6 33981318 33983468 PCT