Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03343 ATGGGTCGGGATGTCCCATGGAAGCCCTTAGAGATCCCCATTTTGACTTTGCATAACCCTTTGCAAACTCAAGTCCATCCAGAGCTTCCTTTTTCCATCCATGAACTAGGTGTCACTCATGTTTTAGTCACAGGAGGTGCAGGCTATATTGGCTCGCATGCTACCCTACGACTTCTGAGGGATTTCTATCGTGTTACCATAGTGGTGTGCCTCTTCATAATGCCAAAAGCTGCTCTGATAAATTTGAATGCATTTACCGTGAATAAAATATTTTCAGAGAATAAATTCGATGCTGTGATGCATTTTGCTGCTGTTGCGTATGTGGGAGAGAGCACACTTGACCCTCTTAAGTATTATCACAACATTACATCAAATACCTTGTTGGTATTGGAGTCTATGGCTAAATACGGAGTGAAGAAATTAATATATTCTAGTACATGTGCAACATATGGGGAACCTGAAAAGATGCCCATTACAGAAGAAACAAAACAGTCTTACCATTATGCTCTTCAATTCCAGAAACCAATTAATCCATATGGAAAAGCCAAGAAGATGTCAAAAGATATCATCCTTGATTTTTCTAAAACTTCTAAAATGACAGTAATGATTCTGAGATATTTCAATGTGATTGGATCAGATCCGGAGGGCAGATTAGCTCGTGGTATTACAACTGGCTTAAAGGAGGCCAGCTTTGTTTTAAGTATCGAGGAAGTAAACCATGCAGGAGATGTTGTCGCGTTCTTGGCGGACTGGCGGATGGTCTCTCCAAGCGTGGTGGTTTTGGTGGATAGCGAGGGGTGGGCGGATATGGCTACAACAGCAGCCTCATCGTTCCGACGCGGCGTCGTGAGCAGTTTGGAGTATTACTCGATGATTTTGGAGTTGCTGGATGTGTTGACGGCTAGGGGAGGAGGGGAGTGGGTGAGGAGAATCGAGATGATGCACGTGCGACCAAAGGTTGGGTGGAAGATGGAAGGAAAAGACGAGGGAGAGAGAGGGAGAAAAGCTGAGAAACACTGA 1020 0.4412 MGRDVPWKPLEIPILTLHNPLQTQVHPELPFSIHELGVTHVLVTGGAGYIGSHATLRLLRDFYRVTIVVCLFIMPKAALINLNAFTVNKIFSENKFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLLVLESMAKYGVKKLIYSSTCATYGEPEKMPITEETKQSYHYALQFQKPINPYGKAKKMSKDIILDFSKTSKMTVMILRYFNVIGSDPEGRLARGITTGLKEASFVLSIEEVNHAGDVVAFLADWRMVSPSVVVLVDSEGWADMATTAASSFRRGVVSSLEYYSMILELLDVLTARGGGEWVRRIEMMHVRPKVGWKMEGKDEGERGRKAEKH 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03343 339 PANTHER UDP-GLUCOSE 4-EPIMERASE 39 219 - -
Vian1g03343 339 Gene3D - 41 210 - -
Vian1g03343 339 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 41 221 IPR036291 -
Vian1g03343 339 Pfam NAD dependent epimerase/dehydratase family 41 219 IPR001509 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03343 Vian-Chr1 55607976 55610489 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03343 244 325 GRAS Transcription Factor Family AT4G36710 45.783 1.46e-12 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vian1g03343 Epimerase 8.9e-33 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03343 K12448 - gmx:100783060 288.5