Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03332 ATGGATACTAAACTCACCAACAACAACAACAACAACCACCGTCACTCCTACATCAACGAACAAGAAGACTCTGATGGACCTCAAGAAAGCATTGTACACTCCCCTCCTTCTTCTTCTCTCTTCAACATCGATGGCGTTCTCACCTCCCCCACTTCCTCATCAAAGAGAAGGAGGGCAATACAGAAAAGGGTGGTGCAAATCCCGATCAAGGAGACAGAAGGGTGTAGGCTAAAAGGAGAGAGCAACACCCCGCCGTCGGATTCGTGGGCATGGAGAAAGTACGGGCAGAAACCGATCAAGGGTTCGCCTTATCCAAGGGGGTACTACAGGTGTAGCAGCTCGAAGGGGTGCCCGGCACGGAAACAAGTGGAAAGGAGCTGCGTGGACCCCACAATGTTGGTCGTCACTTACTCTTCCGACCACAATCATCCCTGGCCAGCTTCAAGAAACAACACCAGGCCCACAAAGAAGCCCGAGCCCGAACCGGTTACGGACCCGGTCGAGCCGGAGCCGGAGCCGGAACTCGAGGAAAAGTTTGCTGAACTGGGCGGGGACGAATCCATGATCAGCACCGCGGATGAGATGGGGTGGCTGGGCGAGATGGAAACGACAACGTCCACTGTTCTAGAAAGCCCGATTATTTCCGCAGGGTACCACGCTGACGTGGAGTCGGCGTTGCTGCCGATGGGGGAAGAGGACGAGCTGCTCTTCGCCGACCTCGGGGAGCTGCCGGAGTGCTCGGTCATGTTCCGGCAGGGGCTTCTGGCGGAGCGGCGGCGGTACACGGCGCCGTGGTGCGGGACCACGAGTTGA 813 0.572 MDTKLTNNNNNNHRHSYINEQEDSDGPQESIVHSPPSSSLFNIDGVLTSPTSSSKRRRAIQKRVVQIPIKETEGCRLKGESNTPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSCVDPTMLVVTYSSDHNHPWPASRNNTRPTKKPEPEPVTDPVEPEPEPELEEKFAELGGDESMISTADEMGWLGEMETTTSTVLESPIISAGYHADVESALLPMGEEDELLFADLGELPECSVMFRQGLLAERRRYTAPWCGTTS 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03332 270 SMART WRKY_cls 85 145 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian1g03332 270 FunFam WRKY transcription factor 65 62 146 - -
Vian1g03332 270 MobiDBLite consensus disorder prediction 1 15 - -
Vian1g03332 270 MobiDBLite consensus disorder prediction 23 55 - -
Vian1g03332 270 MobiDBLite consensus disorder prediction 139 153 - -
Vian1g03332 270 SUPERFAMILY WRKY DNA-binding domain 83 146 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian1g03332 270 MobiDBLite consensus disorder prediction 139 174 - -
Vian1g03332 270 ProSiteProfiles WRKY domain profile. 86 146 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian1g03332 270 MobiDBLite consensus disorder prediction 1 60 - -
Vian1g03332 270 Pfam WRKY DNA -binding domain 87 144 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian1g03332 270 Gene3D WRKY domain 74 147 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian1g03332 270 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 16 248 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03332 Vian-Chr1 55509198 55510502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03332 36 252 WRKY Transcription Factor Family AT1G29280 59.735 2.38e-79 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vian1g03332 WRKY 6e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03332 - - gmx:100127392 409.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03332 1 55509198 55510502 Vian1g03332 1 55509198 55510502 ECH