Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03317 ATGGATCTGGCAAAAAGCAAAGGTAGTGGTGAAGTTTTGGATCATGTTGATGAAAGGGTGAGTGACGATTTGAACCAATTGGTTGAAGGAAATGCAATTGATGCAGGAGGTGGACATAGGTCGGATGAAAGAGTTAGTGTAAGTGGGGAAGATGAGACTACAGACCAGATGTGTAATGGTCTTGGTTTGAATGTGGAGCTAAAGGAGGGGCTGCAAGAAGTTAATGATCAGAACCTGGTTGGACCTCAAGAAAATAATGATACATTACATGGGGTTGATCAAGGAACCAGTTATAGTTCAAGAAATTTGGTTAGTGGGGAAGTACCTGAGACTTGTGTTGTAATAGATCCTTCCGCACAGATTGATTGTGTCAGTGGAGAAAATAGGAAATTGGAAGCAAAACCTAATGATTCAGGCTTGAGCAAGGTGTCCAAGAAAGTGATAAGAGGAGTGTCTGACATCGATAAAAATTCATGTGTGATTGATATAAACCGTGGCAGCTGCGACGGTTTTAGTGAGAATCTGGAAGGTGAATTGATTTGTAGGATTTGCCATCTGGCCTCTGGGCAACCATTAGAAGCAGAAGCTGTTGGCACTGTAAGTAGTGCTGCTACTACGAATACAGATTTGATTCAGCTTGGTTGTGCTTGTAAAGATGAATTAGGCATTGCTCACAGTCATTGTGCTGAGGCATGGTTCAAGATTAAAGGAAACAGGTTGTGTGAAATATGTGGTGAGACTGCAAAAAATGTTTCGGACGTTGCTGATCATGGATTTATTGAAGAATGGAATGATACTAGATTCATGGGCAATGATGATACCTCATCCAGAAGATTTGGTGGATGCTGGCGTGGACAACCATTTTGTAACTTCTTAATGGCATGCCTAGTTATAGCGTTTGTTCTACCTTGGTTCTTTCGTGTAAATATGTTCTAG 936 0.4124 MDLAKSKGSGEVLDHVDERVSDDLNQLVEGNAIDAGGGHRSDERVSVSGEDETTDQMCNGLGLNVELKEGLQEVNDQNLVGPQENNDTLHGVDQGTSYSSRNLVSGEVPETCVVIDPSAQIDCVSGENRKLEAKPNDSGLSKVSKKVIRGVSDIDKNSCVIDINRGSCDGFSENLEGELICRICHLASGQPLEAEAVGTVSSAATTNTDLIQLGCACKDELGIAHSHCAEAWFKIKGNRLCEICGETAKNVSDVADHGFIEEWNDTRFMGNDDTSSRRFGGCWRGQPFCNFLMACLVIAFVLPWFFRVNMF 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03317 311 SMART ringv_2 180 245 IPR011016 GO:0008270
Vian1g03317 311 Pfam RING-variant domain 204 244 IPR011016 GO:0008270
Vian1g03317 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 256 IPR013083 -
Vian1g03317 311 ProSiteProfiles Zinc finger RING-CH-type profile. 173 251 IPR011016 GO:0008270
Vian1g03317 311 MobiDBLite consensus disorder prediction 31 55 - -
Vian1g03317 311 PANTHER ZINC FINGER, RING-CH-TYPE 76 311 - -
Vian1g03317 311 MobiDBLite consensus disorder prediction 36 50 - -
Vian1g03317 311 SUPERFAMILY RING/U-box 178 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03317 Vian-Chr1 55304541 55307493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03317 161 310 C3H Transcription Factor Family AT5G05830 36.709 1.67e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03317 - - gmx:100791129 543.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03317 1 55304541 55307493 Vian1g03317 1 55304541 55307493 ECH