Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03316 ATGTCCACTTCTGATGCCAATGTGAATGACTCCGTGACTGGTCACATTATATCCACTACAATGGAAAGAAAAATTGGGAAGCCCAAACAGACTAGAAGTTATCTGGCAGAACGCATTGTGGGGACTGGGTCATTTGGAATTGTCTTCCTGGCTAAATGCGTGGAAACTGGGGAGCTAGTGGCCATCAAGAAGGTTTTACAGGACAGAAAAGGCAAGAGTCGTGAGCTACGGTTAATGCGCATGATGGACCATCCAAATGTGATCTCTCTGAAGGACCGGTTCTTTTCCACTACAAGTGAAGATGAACTTTTTCTTAATTTGGTGATGGAATATATTCCTGAGTCTATGCATCGAGTCTCAAAGTTCTACAGTAACACTAATCAGAGCATGCCACTTATCTTTGTAAAACTTTACATGCACCAGATTTTCCGGGGGCTGGCTTATATCCACACAGTCCCTGGAGTTTGCCACAGAGATTTGAAGCCTCAAAATATACTGGTTGATCCTCTTACACACCAGGTTAAGATATGTGATTTTGGAAGTGCAAAAGTGCTGGTTAAAGGTCAAGCTAATTTATCACACATATGTTCACTTTTCTATCGGGCACCCGAACTAATCTTTGGTGCCACTGAGTACACAACTTCAATTGATATTTGGTCAGCTGGCTGTGTCCTTGCTGAACTGCTTTTGGGCAAGCCATTATTTCCTGGCGACAATGCAGTGGACCAACTTGTAGAGATTATCAAGGTTCTTGGCACACCCTCCCAAGAGGAAGTTTGCAGTTCAAATTCAAGCAACAATGATTTCAAGTTTCCACAGATATTCCACCAAAATATGCCTCCAGAAGCAATTGATCTTACTTCCCGGCTCCTGCAGTATTCCCCAACCCATCGTTGTACTGCGCTAGAAGCATGTGCACACCCATTCTTTGATGAACTCCGTGAACCCAATGCTCAATTGCCAGATGGTCGGCCATTTCCCCCTCTATTCAACTTTAAACAAGAGTTATCCGGAGCTTCTCCAGAACTTATTGATAAGTTAATACCTGATCATGCGAAGCTACAAAATACCCATTTTGGTGGAACATGA 1089 0.4325 MSTSDANVNDSVTGHIISTTMERKIGKPKQTRSYLAERIVGTGSFGIVFLAKCVETGELVAIKKVLQDRKGKSRELRLMRMMDHPNVISLKDRFFSTTSEDELFLNLVMEYIPESMHRVSKFYSNTNQSMPLIFVKLYMHQIFRGLAYIHTVPGVCHRDLKPQNILVDPLTHQVKICDFGSAKVLVKGQANLSHICSLFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGKPLFPGDNAVDQLVEIIKVLGTPSQEEVCSSNSSNNDFKFPQIFHQNMPPEAIDLTSRLLQYSPTHRCTALEACAHPFFDELREPNAQLPDGRPFPPLFNFKQELSGASPELIDKLIPDHAKLQNTHFGGT 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03316 362 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 7 353 - -
Vian1g03316 362 CDD STKc_GSK3 29 313 IPR039192 -
Vian1g03316 362 SUPERFAMILY Protein kinase-like (PK-like) 27 334 IPR011009 -
Vian1g03316 362 SMART serkin_6 34 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03316 362 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672|GO:0006468
Vian1g03316 362 FunFam Glycogen synthase kinase-3 beta 18 113 - -
Vian1g03316 362 Gene3D Transferase(Phosphotransferase) domain 1 114 353 - -
Vian1g03316 362 Gene3D Phosphorylase Kinase; domain 1 19 113 - -
Vian1g03316 362 Pfam Protein kinase domain 36 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03316 362 FunFam Shaggy-related protein kinase kappa 114 353 - -
Vian1g03316 362 ProSiteProfiles Protein kinase domain profile. 34 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03316 362 ProSitePatterns Protein kinases ATP-binding region signature. 40 64 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03316 Vian-Chr1 55278021 55281866 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03316 40 318 Core Cell Cycle Gene Families AT1G76540 35.714 2.18e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Vian1g03316 Pkinase 1.6e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03316 K14502 - gmx:100812801 629.402