Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03314 ATGATATTGGATGAGTGGAAAAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAGGTATTATGATGGCTTTCTATGTTTTAGTTTTTTGTTTCTCTGCATCAACAGGTAAGAGGAAAGCAAGTGCTCATTATATTCTAGGGTGGAGTTTTGCATTGAATGGGGTTGCTCCTCCATTAGATTATGCACTACTTCCAAAGCCACCACCAAAGGAGAAACACTCACAGTCTTTTCCTTGGATCAAGGTTATAATTGGCATGATGTCTCCTTTGACATTTACCTTGTTGTGCCTTTTTCTTTATGTGACACTCTATAAGAGATACACGGTATTTGAAACTCTTGAGGACTGGGAAATGGATTGTCCTCACAGGTTCAGATACAGAGATCTTCACTTAGCAACAAAGGGGTTCGTAGAAAGCCAACTAATTGGAGTTGGAGGCTTTGGTTCTGTTTACAAAGGGGTGTTACCCAGAACAGGAACTGAGGTTGCTGTTAAAAGGATCCTGAGAACTCCAGCCAAAGGAATGAGGGAATTTGCATCTGAGATTGAAAGCTTAGGAAGATTGAGGCACAAGAATTTGGTGAACCTTCAAGGGTGGTGCAAGCACAAGAATGATCTCCTTTTGGTTTATGATTACATTCCAAATGGGAGCCTTGACTCTCTCCTATTCAGTAGAAGCTTTGTTTTGGATTGGGATCAAAGATTCAGAATTCTCAAAGTTGCTCGGCTCAATGGTGACAACGCATTGTACCTGTCTACTCCCATTGATAAAGAGGTGGGTGGTATTATTTTGGGGGCAAATGTCATGATTGAGATAATTGGCCTTGCTGACATAAAGTCATCATTGAACTTACACACTACTCCCACCCATTCTCTCTCTTTTCTATATAATCCCAACCCACACGGCCCCCCTTTCCACTCCTCCACATCTCCCCTGCTTTTCATCATCATCATCATCCCCTTCTTACTCTCTCTCTTTCAACTGCACCTCAATCCCACTCCCTCGTTACCCAACTTCTTCAGCAGCTAA 1044 0.4243 MILDEWKRLYSNTKTNFREVAIKGIMMAFYVLVFCFSASTGKRKASAHYILGWSFALNGVAPPLDYALLPKPPPKEKHSQSFPWIKVIIGMMSPLTFTLLCLFLYVTLYKRYTVFETLEDWEMDCPHRFRYRDLHLATKGFVESQLIGVGGFGSVYKGVLPRTGTEVAVKRILRTPAKGMREFASEIESLGRLRHKNLVNLQGWCKHKNDLLLVYDYIPNGSLDSLLFSRSFVLDWDQRFRILKVARLNGDNALYLSTPIDKEVGGIILGANVMIEIIGLADIKSSLNLHTTPTHSLSFLYNPNPHGPPFHSSTSPLLFIIIIIPFLLSLFQLHLNPTPSLPNFFSS 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03314 347 PANTHER - 26 246 - -
Vian1g03314 347 FunFam serine/threonine-protein kinase PBS1-like 111 217 - -
Vian1g03314 347 ProSiteProfiles Protein kinase domain profile. 141 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03314 347 SUPERFAMILY Protein kinase-like (PK-like) 127 243 IPR011009 -
Vian1g03314 347 Gene3D Phosphorylase Kinase; domain 1 110 217 - -
Vian1g03314 347 Pfam Protein kinase domain 142 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03314 347 ProSitePatterns Protein kinases ATP-binding region signature. 147 178 IPR017441 GO:0005524
Vian1g03314 347 SUPERFAMILY Concanavalin A-like lectins/glucanases 36 163 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03314 Vian-Chr1 55263499 55264986 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03314 36 244 Receptor kinase-like Gene Family AT5G01560 52.511 2.05e-68 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vian1g03314 Pkinase 4.3e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03314 - - vum:124829217 418.698