Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03312 ATGAAGCCCCTTTGCAGATTCTTGATTTTCCTATCGCTATTTGCTCTGGTGGAATCTTCATGCAGCAGTGAAGAGCACGTTTTGGTGTCAAAGGCTTTCAAATCAGTCTCTGGCTTCAACGCTTACTCCTGGTTTCAAACCAACTGTTCACAAGCTCACATCACCAGAATAGTACTTCCATCACAAAACCTCACTGGTACAATCTCCTGGGGTTACCTCAGGAACATGTCCAACCTTCAGGTTTTCGATCTCTCAAGAAATTCTTTACAGGGCCACGTCCCAAGCTGGTTTTGGTCAACTTCATCCTTATTGGAAATAAACCTCTCCGGTAACAGGTTCGGAGGGAGCATTATTTTCCACTCCTCCAAACCCACAACACAAAACACCTCGTTTTCAATTTCATCCATTCGAACGCTCAATCTCTCCCACAACAGGTTTACCAATTCAATCCAACTTTCTGCCTTCCAGAACCTTAAAATCCTCGACCTTTCTAACAACAACCTGCGAACACTCCCCTCCGGACTCCAAAACCTCTCCAAGCTTCAACACCTCGATCTCTCATGCTGTAATCTCCAAAGCGACGTAAAACCAGTTTCCTCTCTTCACTCACTTCGCTACTTGGACTTATCGAACAACACCTTCTCGGGAAATTTCCCTTTTGATTTCCCTCAACTGGCCACCCTCGAATTCCTCAACATCTCCTATAACAACTTCACCTCATCAACTAGCCTAACCAAGTTCATCAAATTCGGTAAATCAGCTTTTATTCACGCTGGCAACAACTTCACCTACGACAGCACCGCGGCCAAAACGACCAACAGCAGTAAAAACTCAGCGCAATCCACCCACAAGAAACAACAGAAGCGAAAATCCAAAACGCTGATTGCTGCAGCGTCGTCTGCGGGATCAGCGGTTGTCCTAATTCTGTTGTCCATTTGGGTACTCCGCATTGTAATTAGGAAGAGGAAGCAACGCGCCAAGAGGAGCAAGTGGGCGATTTCCATGCCGGTTCCACATGGTATGAACGAGGTGACAAGCAGAGTGGAGAAATCAGGGCCGTTCGCTTTCGAGACTGAATCGGGGTCAACGTGGGTGGCTGACCTGAAGGAACCGTCTTCTGCGGCGGTGGTGATGTTCGAGAAGCCGTTGATGAACCTTACTTTCAAGGACCTCATTGTTGCCACGTCATACTTCGGGAAAGACTCGCTGCTGGCGGAGGGAAGGTGTGGGCCCGTTTACAGAGCCGTGCTGCCGGGGGACCTCCACGTGGCAATCAAGGTCCTGGAACACGCTAGAGACGTTGATCCTGATGATTCGGTCGCCACGTTCGTTGACCTCTCAAGACTGAAGCACCCCAACTTGTTGCCACTCTCCGGTTACTGCATTGCTGGCAAAGAGAAACTGGTACTGTACGAGTACATGGCTAACGGCGATCTTGGAAGGTGGCTACACGAGCTTCCAACAGGGGACACCAATGTAGAGGATTGGACAGGCGACACGTGGGAGATTCAAAACGGCGCCGTCGACGACGGGTCCCCTGAAAAGATGGGGTGGCTGACACGACATCGTATTGCGGTTGGGATAGCGCGTGGTCTCGCGTACCTGCACCACGCGCGTTCGAAGCCCGTCGTACACGGCCACTTCGTCACCTCGAACATTTTACTCGCAGACGATTTCGAGCCCCGGATCTCCGATTTTGGATTGCGACACGGCCGGAACTCGAACGGAGGCACGGAGGCAGACGTGTACTGCTTCGGGGCGGCGCTAATGGAACTCCTGACGGGGAAAGAAAGCACGGCGGAGAAGGTGGCAGCAGCGAGGAAGGCGGTTAGGGAGGGGCAGGGCGTTAGGGTTCTGGACGAGAGGCTCCTACTCGGTGGTGACTCGGTGGTGAGTGAGATGGTGGAGACTCTCCGAGTGGCGTTTTTGTGTACGGCGGAACACTCTTGGAAGAGGCCCACAATGCAGCAGGTATTGGGTTTGCTGAAAGACATTCGTCCTCATCAACAGCAACTCGTGACGAGTTGA 2028 0.5158 MKPLCRFLIFLSLFALVESSCSSEEHVLVSKAFKSVSGFNAYSWFQTNCSQAHITRIVLPSQNLTGTISWGYLRNMSNLQVFDLSRNSLQGHVPSWFWSTSSLLEINLSGNRFGGSIIFHSSKPTTQNTSFSISSIRTLNLSHNRFTNSIQLSAFQNLKILDLSNNNLRTLPSGLQNLSKLQHLDLSCCNLQSDVKPVSSLHSLRYLDLSNNTFSGNFPFDFPQLATLEFLNISYNNFTSSTSLTKFIKFGKSAFIHAGNNFTYDSTAAKTTNSSKNSAQSTHKKQQKRKSKTLIAAASSAGSAVVLILLSIWVLRIVIRKRKQRAKRSKWAISMPVPHGMNEVTSRVEKSGPFAFETESGSTWVADLKEPSSAAVVMFEKPLMNLTFKDLIVATSYFGKDSLLAEGRCGPVYRAVLPGDLHVAIKVLEHARDVDPDDSVATFVDLSRLKHPNLLPLSGYCIAGKEKLVLYEYMANGDLGRWLHELPTGDTNVEDWTGDTWEIQNGAVDDGSPEKMGWLTRHRIAVGIARGLAYLHHARSKPVVHGHFVTSNILLADDFEPRISDFGLRHGRNSNGGTEADVYCFGAALMELLTGKESTAEKVAAARKAVREGQGVRVLDERLLLGGDSVVSEMVETLRVAFLCTAEHSWKRPTMQQVLGLLKDIRPHQQQLVTS 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03312 675 PRINTS Leucine-rich repeat signature 201 214 - -
Vian1g03312 675 PRINTS Leucine-rich repeat signature 158 171 - -
Vian1g03312 675 ProSiteProfiles Protein kinase domain profile. 398 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03312 675 Gene3D Transferase(Phosphotransferase) domain 1 474 574 - -
Vian1g03312 675 MobiDBLite consensus disorder prediction 269 290 - -
Vian1g03312 675 ProSiteProfiles Leucine-rich repeat profile. 157 179 IPR001611 GO:0005515
Vian1g03312 675 FunFam Calmodulin-binding receptor kinase CaMRLK 134 244 - -
Vian1g03312 675 Gene3D Phosphorylase Kinase; domain 1 358 473 - -
Vian1g03312 675 SUPERFAMILY L domain-like 42 241 - -
Vian1g03312 675 Gene3D Ribonuclease Inhibitor 126 281 IPR032675 -
Vian1g03312 675 FunFam Putative LRR receptor-like serine/threonine-protein kinase 359 473 - -
Vian1g03312 675 SUPERFAMILY Protein kinase-like (PK-like) 376 666 IPR011009 -
Vian1g03312 675 SMART LRR_typ_2 178 202 IPR003591 -
Vian1g03312 675 SMART LRR_typ_2 76 99 IPR003591 -
Vian1g03312 675 SMART LRR_typ_2 155 177 IPR003591 -
Vian1g03312 675 Gene3D Transferase(Phosphotransferase) domain 1 575 674 - -
Vian1g03312 675 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 578 666 - -
Vian1g03312 675 Pfam Protein tyrosine and serine/threonine kinase 403 570 IPR001245 GO:0004672|GO:0006468
Vian1g03312 675 Gene3D Ribonuclease Inhibitor 15 125 IPR032675 -
Vian1g03312 675 Pfam Leucine rich repeat 135 191 IPR001611 GO:0005515
Vian1g03312 675 Pfam Leucine rich repeat 54 113 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03312 Vian-Chr1 55233185 55235845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03312 52 665 Receptor kinase-like Gene Family AT5G07280 30.703 1.09e-72 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Vian1g03312 PK_Tyr_Ser-Thr 6.3e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03312 - - gmx:100788556 1041.95