Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03309 ATGCCTAGGCTTCGTTGGACACCTGAACTTCATCTTTCCTTTGTGCATGCTGTTGAAAGGCTTGGAGGTCAAGAGAGAGCAACACCGAAGTTGGTGCTTCAGCTAATGAACGTGAGAGGACTCAGCATTGCTCATGTCAAGAGTCATTTGCAGATGTACCGGAGCAAGAAACTCGATGAGGCTGGCCAAGTATTAAGTGAAACATACAAATCATCCCACGAACTTGGTCGTATTTCTCATGTGACCCATCCTCGTCAACATTTTAAGATGGGAAATGGTGGAATTATTCTAGCAAGTGATTACACCGATCACAGTTATTACCATGGTCTCTTGCATCCTTCAAACCTATCACACTCACATTCAAAAGCCATCGATTCAAGACACCAACAATGGTTCTTCAACAATCATCAACCTTTTAGAAAACCAAGTTACTTTAGCAACGAAGTTGGCTCAGCAACCTTACAAACGCAAGCAAGATCAATGTCTTCAAACCAAATTCAAGTAATGGATGCTACCAGCATTGCACCCATGAGACCAAGCCAATTTCTTGAAGAGAAAAGATGGCCTCCATTGGAAATCATGAACAATCACCCCTGGAAGAAAAGGTTACCTTCTAATACTGACTCAAAATCTGTTCTGCTTCATCAATTTGGCTCCACAACTTCACCATCTCTTAGACCAACTGAGTTAAACTTCCCAAACAAAACAAGAATCAGGGAACATCTATCTAACTCCGATGAGCATCGCAGCTATTCCAACGCTTTCAATCCTGAATTTGAACCTCCCTTTCGGATTAAGTCGAATCAAGAAAAAATGCAGAAAGAGAAGCAGTGGGTGCCTGATCTGCGACTGAGTTTAAGTCAGAGAGATGGCAACAGTGATGGGAAGAATGATCATTGCAGAGAAACCCAAGAAATCAACACGAAACTTTCACTTTCATAG 942 0.4204 MPRLRWTPELHLSFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDEAGQVLSETYKSSHELGRISHVTHPRQHFKMGNGGIILASDYTDHSYYHGLLHPSNLSHSHSKAIDSRHQQWFFNNHQPFRKPSYFSNEVGSATLQTQARSMSSNQIQVMDATSIAPMRPSQFLEEKRWPPLEIMNNHPWKKRLPSNTDSKSVLLHQFGSTTSPSLRPTELNFPNKTRIREHLSNSDEHRSYSNAFNPEFEPPFRIKSNQEKMQKEKQWVPDLRLSLSQRDGNSDGKNDHCRETQEINTKLSLS 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03309 313 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 174 IPR044847 GO:0000976|GO:0006355|GO:0010158
Vian1g03309 313 NCBIfam myb-like DNA-binding domain, SHAQKYF class 2 57 IPR006447 GO:0003677
Vian1g03309 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 58 IPR017930 -
Vian1g03309 313 Gene3D - 1 58 - -
Vian1g03309 313 MobiDBLite consensus disorder prediction 243 262 - -
Vian1g03309 313 SUPERFAMILY Homeodomain-like 2 56 IPR009057 -
Vian1g03309 313 MobiDBLite consensus disorder prediction 270 313 - -
Vian1g03309 313 FunFam Myb family transcription factor 1 58 - -
Vian1g03309 313 Pfam Myb-like DNA-binding domain 4 54 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03309 Vian-Chr1 55206469 55210994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03309 1 59 G2-like Transcription Factor Family AT2G42660 83.051 7.04e-29 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vian1g03309 Myb_DNA-binding 1.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03309 - - gmx:100808625 542.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03309 1 55206469 55210994 Vian1g03309 1 55206469 55210994 ECH
Vian6g01676 6 34283680 34286305 Vian1g03309 1 55206469 55210994 ECH
Vian1g03309 1 55206469 55210994 Vian6g01676 6 34283680 34286305 PCT