Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03308 ATGGAAAGCATATGGGGCCCATATGGATTGTGGCTCAGAATTTATGTTGGATTGATTTCTCTATGGGGAACTCAACATTGTTTGTCTCTAAACGATGAAGGATTATCCTTGTTGGAATTTCGGGGAAGAATAACTTGTGATCCTTTTCATGCTCTGTCAAATTGGAATCCAAATGATTGTAATCCTTGCCAGTGGTATGGTGTTCGTTGTGTAGGTGGTAAAGTGCGAATGCTGGTCCTACCTGAACTATATTTGGAAGGCACATTGGCTCCTGAGCTTGGGAAACTTAGTCATCTAAAATCCCTTATATTATACAAGAACAGTTTTTCTGGTACTATTCCCGAAGAACTTGGTGATCTAGACAAGCTGGAGTTATTGGATTTAAGGGGGAATAACATGACTGGATGTGTCTCAGCAGAAATTGGCCATTTGTTGTTGTCAGAACAATTGTTCATTTGTGACAAGAAATGTGAAAGCAGTGATTCTCAAGGGATTGGAAAGCTCAGATTGCCCTGTAGTATCAATCTTTCAACTCGTTTGACAACTTCATTGCTTGGAAAGAACCGAAAGGTTGCACCCAGGCTCAAGCTAGTAAAGGCCACCCCTCATGCCCATGCAGAGAAATGGTGTGGCATTCTGACTGGCTCTGATGATTCAGAGATTGACCAGAATGTAGAAAATGTAGTCAATTCAGCACGACGGAAGTTGCTTGATCAGTCTAGTAACCTTGCAGCTGCACCTTTCAGTGGTGGGCCTACTATACAGATCAGTTATATTCCAATTACCCAGAGCAGTGGAGCTTTTCCAGCCTTCCCAGACACCAATAAGCAACAGAATCAGTCACCTGGACAATTGCCTTCAACTTCTAATTTGACACCTACGAATCAAACAAGTCAACCAAGTTCAGCTAATGTTGCTTCTGGAAAATTATGGGAGTATATTATTATAATAGCAGGTGTAGCTGTCTTGGTCATTATTGTTTTGATCATGCTTTGCGTTTGGCGAAAACGAGCAGCAAAAGTAATAAAGCCATGGAAAACAGGAATAAGTGGACAGCTGCAGAAAGCATTTATAACAGGGGTCCCCAAGTTGAATCAGGCAGAGCTGGAAACAGCCTGTGAAGATTTCAGCAATATTATTAATACTTTTGATGAATGCACCATATATAAGGGAACACTATCCAGTGGAGTCGAGATTGCTGTTGATTCAACTATTGTTACTTCGGCCCGTGATTGGTCAAAGACAATGGAGACGGCCTATCGCAAAAAGATTGCCACATTATCCCGTGTTAACCATAAGAACTTTACCAATCTTATTGGGTACTGTGATGAAGAAGAACCATTCACCAGGATGATGGTATTTGAGTATGCTCCGAATGGAAGCTTATTTGAGCATCTGCATGTTAAGGAAGTTGAACCTCTTGACTGGAGCGCAAGAATGAGGGTTATTATGGGCACATCATATTGTCTTCAGTATATGCACCATGATCTGAATCCACCAGTAGCTCATTCCAACCTCAATTCCGTTGCTATATTGTTGACAGATGACTTTGCTGCTAAGATATCAGAAATAGCTTTTGGCAAGAATGTGTCATCACAAGCCAACACACCTGGACATGAGTCACAGAAATGTGACTTGCCACCCCATGCTGATCCTGAAACCGATGTCTATAACTTTGGAGTGTTGTTGCTTGAAATCATTTCCGGAAAACTACCATACTCTGAAGAACATGGCCACATTACTGACTGGGCTGCTGAGCACTTGAATAATAAGCAAAGCGTCAGCAATCTGATTGATCCCTCGTTGGAATCCTTCAAAGAAGAAGAACTTGATGTCATCTGTGAGGTGATCAAAGAATGTCTTCAATCTGATGCAAGGCTAAGACCAACGATGAAGGACATAGCTCCCAGATTGAGGGAAGTGCTGCATGTATCACCTGAGCAAGCTGTCCCTAGACTCTCTCCCCTCTGGTGGGCTGAACTGGAGATCTTATCATTGGAGACCTCTTAA 2010 0.4219 MESIWGPYGLWLRIYVGLISLWGTQHCLSLNDEGLSLLEFRGRITCDPFHALSNWNPNDCNPCQWYGVRCVGGKVRMLVLPELYLEGTLAPELGKLSHLKSLILYKNSFSGTIPEELGDLDKLELLDLRGNNMTGCVSAEIGHLLLSEQLFICDKKCESSDSQGIGKLRLPCSINLSTRLTTSLLGKNRKVAPRLKLVKATPHAHAEKWCGILTGSDDSEIDQNVENVVNSARRKLLDQSSNLAAAPFSGGPTIQISYIPITQSSGAFPAFPDTNKQQNQSPGQLPSTSNLTPTNQTSQPSSANVASGKLWEYIIIIAGVAVLVIIVLIMLCVWRKRAAKVIKPWKTGISGQLQKAFITGVPKLNQAELETACEDFSNIINTFDECTIYKGTLSSGVEIAVDSTIVTSARDWSKTMETAYRKKIATLSRVNHKNFTNLIGYCDEEEPFTRMMVFEYAPNGSLFEHLHVKEVEPLDWSARMRVIMGTSYCLQYMHHDLNPPVAHSNLNSVAILLTDDFAAKISEIAFGKNVSSQANTPGHESQKCDLPPHADPETDVYNFGVLLLEIISGKLPYSEEHGHITDWAAEHLNNKQSVSNLIDPSLESFKEEELDVICEVIKECLQSDARLRPTMKDIAPRLREVLHVSPEQAVPRLSPLWWAELEILSLETS 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03308 669 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Vian1g03308 669 Pfam Protein tyrosine and serine/threonine kinase 388 637 IPR001245 GO:0004672|GO:0006468
Vian1g03308 669 PANTHER PROTEIN MALE DISCOVERER 2 18 666 - -
Vian1g03308 669 FunFam Leucine-rich repeat receptor-like kinase 35 150 - -
Vian1g03308 669 Gene3D Phosphorylase Kinase; domain 1 344 456 - -
Vian1g03308 669 Gene3D Ribonuclease Inhibitor 34 151 IPR032675 -
Vian1g03308 669 FunFam Inactive receptor-like serine/threonine-protein kinase 348 456 - -
Vian1g03308 669 MobiDBLite consensus disorder prediction 269 303 - -
Vian1g03308 669 Gene3D Transferase(Phosphotransferase) domain 1 457 650 - -
Vian1g03308 669 SUPERFAMILY L domain-like 31 169 - -
Vian1g03308 669 SUPERFAMILY Protein kinase-like (PK-like) 367 638 IPR011009 -
Vian1g03308 669 ProSiteProfiles Protein kinase domain profile. 339 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03308 Vian-Chr1 55182407 55187496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03308 78 641 Receptor kinase-like Gene Family AT5G56040 25.732 1.56e-44 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Vian1g03308 PK_Tyr_Ser-Thr 4.4e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03308 - - gmx:100808098 1044.65