Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03292 ATGGCAACTCTAGTTGAACCACCAAACAGAATTAAGCCAAAGGGAAAACATTATTATACAATATGGCAAACTTTGTTTGAGATTGATACGAAGTACGTTCCAATCAAGCCTATTGGCCGCGGAGCATATGGCGTGGTGTGCTCTTCCATCAATCGGGAAACCAATGAGAGAGTTGCAATTAAGAAGATTGGTAATATATTTGAGAATTCTATTGATGCTTTGAGAACTTTGAGGGAACTGAAGCTGCTTAGACACATTCGGCACGAGAATGTCATTGCTTTGAAAGATGTCATGATGCCAATCCACAGGACAAGTTTTAAGGATGTCTACTTGGTCTACGAACTCATGGATACCGATCTTCACCAAATTATTAAGTCCTCGCAGCCACTTTCCAATGATCATTGCAAATATTTCTTGTTTCAGCTCCTTCGAGGTCTTAAATACCTCCATTCAGCAAATATTCTTCACCGGGATTTGAAGCCTGGGAATCTGCTCATAAATGCCAACTGTGATTTGAAGATATGTGACTTTGGGCTTGCTCGAACTAATGGAGTTGATGGCCAGTTTATGACAGAATATGTTGTCACTCGTTGGTACCGTGCACCGGAGCTCTTGCTATGCTGTGACAACTACGGGACCTCCATTGATGTCTGGTCAGTAGGGTGCATCTTTGCTGAGATTCTTGGTAGAAAGCCAATTTTCCCTGGCACCGAGTGTCTCAACCAGCTGAAACTAATTATAAGTGTTCTTGGAAGCCAGCATGAATCTCATATTGAGTTTATTGATAATGCAAAAGCCAGGAGGTTTATCAAATCACTGCCCTATACTAGGGGGAGACACTTCTCTCAGCTATATCCACAAGCAGATCCATTAGCCATAGATTTGTTGCAAAAGATGCTTGTATTTGATCCAACCAAGAGAATTACTGTCTTAGAAGCTCTCCAACACCCATATATGTCTGGCCTGTATGATCCAAGGTGCAACCCTCTTGCACAGGTTCCCATCAATCTTGACATAGATGAACATTGGGGAGAACAGATGATTAGGGAAATGATGTGGAATGAGATGCAACATTATCATCCTGAAGCTGCTTCTGCCAATGCATAG 1107 0.4201 MATLVEPPNRIKPKGKHYYTIWQTLFEIDTKYVPIKPIGRGAYGVVCSSINRETNERVAIKKIGNIFENSIDALRTLRELKLLRHIRHENVIALKDVMMPIHRTSFKDVYLVYELMDTDLHQIIKSSQPLSNDHCKYFLFQLLRGLKYLHSANILHRDLKPGNLLINANCDLKICDFGLARTNGVDGQFMTEYVVTRWYRAPELLLCCDNYGTSIDVWSVGCIFAEILGRKPIFPGTECLNQLKLIISVLGSQHESHIEFIDNAKARRFIKSLPYTRGRHFSQLYPQADPLAIDLLQKMLVFDPTKRITVLEALQHPYMSGLYDPRCNPLAQVPINLDIDEHWGEQMIREMMWNEMQHYHPEAASANA 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03292 368 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 31 334 - -
Vian1g03292 368 Pfam Protein kinase domain 33 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03292 368 FunFam Mitogen-activated protein kinase 18 126 - -
Vian1g03292 368 SMART serkin_6 32 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03292 368 FunFam Mitogen-activated protein kinase 116 345 - -
Vian1g03292 368 Gene3D Transferase(Phosphotransferase) domain 1 116 345 - -
Vian1g03292 368 CDD STKc_TEY_MAPK 26 361 - -
Vian1g03292 368 ProSitePatterns Protein kinases ATP-binding region signature. 38 62 IPR017441 GO:0005524
Vian1g03292 368 ProSitePatterns MAP kinase signature. 67 170 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vian1g03292 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672|GO:0006468
Vian1g03292 368 ProSiteProfiles Protein kinase domain profile. 32 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03292 368 Gene3D Phosphorylase Kinase; domain 1 19 355 - -
Vian1g03292 368 SUPERFAMILY Protein kinase-like (PK-like) 24 325 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03292 Vian-Chr1 54902562 54904281 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03292 1 368 MAP Kinase Gene Family AT2G18170 84.783 0.0 655
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vian1g03292 Pkinase 1.5e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03292 K20537 - gmx:100783422 740.725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03292 1 54902562 54904281 Vian1g03292 1 54902562 54904281 ECH