Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03290 ATGGAAGATCAAAAGCAAAGGACGAAAGAGAAGATGAAGAACAAGAACAAGTTTGTTGGAGTGAGACAAAGGGCTTCAGGGAAATGGGCTGCAGAGATCAAAGACACGTCAAAGAAGATCAGGATGTGGCTTGGTACTTACCAAACTGCTGAGGAAGCTGCTCGAGCTTATGATGAAGCTGCATGTCTCCTTAGAGGTTCAAACACTCGCACCAATTTCTCTACTCAACCCTGTACCACCATTGCTACAAATTCTCCTATTTCTCTAAAACTCAGAAATCTTCTTCATCGTAAAGCCATGTCAAATCAAACTCAAGTTCAAAACCAGCCCTCTGGTGTAAGTCCATCTTTGCAAGGTGCAACTACTCCAAATGAAGAAACCTCTGCTTTTGGTGGTGAAGGTGATAAGTCTTTGTTTGTGGTTCAGAACCAGGTCTCTGATAATATGTATGGATTGGATATGAATATGATCAATTGTGTGATGGGTATCACACCAGATGCATCTCAGCTTGATTTCTCTTCTTGGCCTTTTGCCCAACAAAGGATTAACGAATTACCATTACCAAAAGATGGATTCAGTGTAGAAAGGCAATTATCAGACTCGGTATATACAACGAATGAGTGCCACCATTTCGAGGATACGTATGAATATGACGTCAGTTATCCTCTCTCGCACTTTTTCTGCTTCACTTGA 693 0.4141 MEDQKQRTKEKMKNKNKFVGVRQRASGKWAAEIKDTSKKIRMWLGTYQTAEEAARAYDEAACLLRGSNTRTNFSTQPCTTIATNSPISLKLRNLLHRKAMSNQTQVQNQPSGVSPSLQGATTPNEETSAFGGEGDKSLFVVQNQVSDNMYGLDMNMINCVMGITPDASQLDFSSWPFAQQRINELPLPKDGFSVERQLSDSVYTTNECHHFEDTYEYDVSYPLSHFFCFT 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03290 230 ProSiteProfiles AP2/ERF domain profile. 17 74 IPR001471 GO:0003700|GO:0006355
Vian1g03290 230 SMART rav1_2 17 80 IPR001471 GO:0003700|GO:0006355
Vian1g03290 230 FunFam ethylene-responsive transcription factor RAP2-11 16 75 - -
Vian1g03290 230 Gene3D AP2/ERF domain 16 76 IPR036955 GO:0003700|GO:0006355
Vian1g03290 230 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Vian1g03290 230 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Vian1g03290 230 CDD AP2 17 73 IPR001471 GO:0003700|GO:0006355
Vian1g03290 230 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 12 122 - -
Vian1g03290 230 Pfam AP2 domain 17 66 IPR001471 GO:0003700|GO:0006355
Vian1g03290 230 MobiDBLite consensus disorder prediction 102 128 - -
Vian1g03290 230 MobiDBLite consensus disorder prediction 102 132 - -
Vian1g03290 230 SUPERFAMILY DNA-binding domain 17 75 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03290 Vian-Chr1 54864612 54865334 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03290 1 96 AP2-EREBP Transcription Factor Family AT5G19790 73.000 6.71e-42 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian1g03290 AP2 1.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03290 K09286 - gmx:100803832 300.441
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03290 1 54864612 54865334 Vian1g03290 1 54864612 54865334 ECH