Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03252 ATGACATGGTGCAATGACTCAGATGAGGAGAGGGGAATTGAACTGGTTGCGCCCACTGTTACTCCTGCAACTAACAACACTCTTGTTACTGACACAAAACAAACCGAAAATCGTACCATAACTTGCCCCTCATGTGGCCATAACATTGAATTCCAAGATCAGACAGGAATCAATGACTTGCCGGGGTTGCCATCTGGTGTGAAATTTGATCCGAATGACCAAGAGATATTAGAGCATTTGGAAGCGAAGGTACTTTCTGATGTTCCCAAGCTCCATCCCCTCATTGATGAGTTCATACCAACGCTTGAAGGGGAGAACGGGATCTGTTACACACACCCAGAAAAGCTTCCAGGTGTAAGCAAAGATGGACAGATCCGGCATTTCTTTCATAGGCCGTCGAAAGCATACACAACCGGAACAAGGAAGAGAAGAAAGGTTCACACTGATGAAGAGGGAAGCGAGACAAGGTGGCACAAAACAGGAAAAACCAGACCAGTTTTTGTTGGTGGTGTTGTGAAGGGTTTCAAGAAAATACTGGTCCTGTACACCAACTACGGGAGGCAAAAGAAGCCGGAGAAGACGAACTGGGTGATGCATCAGTACCATCTTGGCAGCAATGAAGAAGAGAAAGATGGAGAATTAGTGGTTTCGAAGGTGTTCTACCAAACACAGCCTCGACAATGTGGTACTTCGATCATAAAGCAGGATCTGTACGATGAAGAAAGATTGACTAACCAGAGTGTTGTCGATGATGATAATATAGTACCTAGAAGTGCAACTCTAATGGACTACTACAACAACCCTTCTTTCATAAATTATGAGCATGTGGGTGGTCGCAATAATAGGGAAACTTCACCTCAACTTATTCCAAATTTGGTTATGCAAGGTGATAGCTCTTCTTTCATTCGCTTAGCAATGGATGCCACCAAAGCCAGGCTGAACACCAAATAG 951 0.4427 MTWCNDSDEERGIELVAPTVTPATNNTLVTDTKQTENRTITCPSCGHNIEFQDQTGINDLPGLPSGVKFDPNDQEILEHLEAKVLSDVPKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKDGQIRHFFHRPSKAYTTGTRKRRKVHTDEEGSETRWHKTGKTRPVFVGGVVKGFKKILVLYTNYGRQKKPEKTNWVMHQYHLGSNEEEKDGELVVSKVFYQTQPRQCGTSIIKQDLYDEERLTNQSVVDDDNIVPRSATLMDYYNNPSFINYEHVGGRNNRETSPQLIPNLVMQGDSSSFIRLAMDATKARLNTK 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03252 316 Pfam No apical meristem (NAM) protein 64 203 IPR003441 GO:0003677|GO:0006355
Vian1g03252 316 SUPERFAMILY NAC domain 58 222 IPR036093 GO:0003677|GO:0006355
Vian1g03252 316 Gene3D NAC domain 72 226 IPR036093 GO:0003677|GO:0006355
Vian1g03252 316 ProSiteProfiles NAC domain profile. 63 222 IPR003441 GO:0003677|GO:0006355
Vian1g03252 316 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 22 256 IPR044799 GO:0003700
Vian1g03252 316 FunFam NAC domain-containing protein 73 72 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03252 Vian-Chr1 54107187 54109800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03252 1 232 NAC Transcription Factor Family AT4G28500 72.103 2.36e-125 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian1g03252 NAM 2.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03252 - - vra:106766970 637.876