Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03250 ATGACCCAACCACTCCCCATCGTCGTTTACGTTCTGTTATCGGTAGTAGCTTTCGTATCGTGTCTCAACCAAGAAGGGCTTTACCTTTACCAACTCAAGCTGTCTCTCGACGACCCTGATTCTACTCTCTCCTCCTGGAACCCCAGGGACGCCACCCCTTGCAACTGGTATGGTGTAACCTGCGCCGGCGATGCCTCCAACACCACTGTTACAGAATTGGACCTTTCCGACACCAACATCGGAGGCCCATTCCCTGCCAACATCCTCTGTCGTCTCCCCAACCTCCTCTCCATAAACTTCTTCAACAACTCCATCAACCAAACCCTCCCTCTCGACATCTCCCTCTGCCGCTCTCTCCGCCACCTCGACCTCTCCCAGAACCTCCTCACCGGTCCCCTCCCCGCCACGCTCCCGCTTCTCCCCAACCTCCGCTACCTCGACCTCACCGGCAACAACTTCTCCGGCCCAATCCCGGACTCCTTCGGAACCTTCCAGAACCTCCAGGTGCTCTCCCTCGTCTCCAATCTTCTAGAAGGTACCATCCCCCCCTCGTTGGGCAACGTCTCCTCTTTGAAAATGCTCAACCTCTCTTACAACCCCTTCTTCCCGGGTCGGATCCCTCCGGAGCTCGGCAACCTCACCAACCTCGAGGTTCTCTGGCTCACCCAATGCAACCTTGTCGGCGTCATTCCGACCTCCCTCGGGAACCTCAACAAGCTCCAGGACCTCGACCTCGCGCTCAATGACCTCTACGGCTCCATCCCGAGTTCGCTCACTCAGTTAACCAGCCTCACGCAGATCGAGTTGTACAACAACTCGCTCTCCGGGGAGTTCCCTCGGGGAATGGGGAATCTCACCCGCTTGAGGCTCCTCGACGCCTCCATGAACCACTTAACGGGGAAGATTCCCGACGAGCTTTGTTCTTTGCCGTTGGAGAGTCTTAATTTGTATGAAAACCGTTTCGAGGGAGAGTTACCGGCCAGCATTGCGGATTCCGAGAATCTTTACGAGCTTCGACTCTTCGGTAACCGCCTCACCGGCAGGTTACCGGCGAATCTTGGCAAGAATTCGCCGCTCCGGTGGCTGGACGTTTCGAGCAACCAGTTCTGGGGGCCTATTCCGGCGACGCTCTGTGATAATGGTGTTCTTGAGGAGCTTCTGGTGATTTATAATCTTTTCTCTGGGGAGATTCCGGCGAGCTTAGGCACGTGCCAGAGCTTGACACGTGTGAGACTAGGATTTAACCGGTTGTCCGGCGAGGTTCCCGCCGGCATCTGGGGGCTTCCGCACGTGTATCTTCTCGAGCTTGTCGACAACTCGTTTTCGGGTTCCATTGCGAGGACCATTGCGGGTGCCGGGAACTTGTCGCTGTTGATTTTGTCGAAGAATAACTTCTCGGGAACGATTCCCGATGAGGTTGGGTGGTTGGAGAATCTCGTGCAGTTTTCCGCCAGTGATAATAAGTTCACTGGCTCGCTTCCTGATAGCATTGTGAATCTTGGGCAGCTTGGGATTCTCGATTTTCATAATAACAGACTCTCTGGGGCGTTGCCGAAAGGGATTCGTTCGTGGAAGAAGCTCAACGATTTGAATTTGGCCAACAATGAGATTGGTGGTACGATTCCTGATGAGATTGGGGGTTTGTCCGTGCTGAACTTTCTAGATATTTCTAGCAACCGCTTTTCCGGGAAAGTCCCCCACGGGTTGCAGAATCTCAAGCTGAATCAGCTTAACTTGTCTTATAACCGTCTGACGGGTGAACTTCCCCCTCTCTTGGCTAAGGATATGTATAGGTCTAGTTTCCTTGGTAATCCTGGCTTGTGTGGAGATTTGAAGGGCTTGTGTGATGGTAGGGGTGAGGCAAAGAATGTAGGTTATGTTTGGCTGCTTCGAGCGATTTTTGTTGTAGCCACTTTGGTTTTCCTTGTAGGTGTGGTTTGGTTTTACTTTAGGTATAAGAATTTCCAGGACGCCAAGAGGGCGATTGATAAGTCAAAGTGGACGTTGATGTCGTTTCATAAACTGGGTTTTAGTGAAGATGAGATTTTGAATTGTCTTGATGAGGATAATGTGATAGGAAGTGGTTCCTCGGGTAAGGTTTACAAGGTTGTGCTTAGCAGTGGGGAGGTTGTTGCTGTGAAGAAGATATGGGGAGGGGTTAGGAAGGAGGTAGAGAGTGGGGATGTTGAAAAGGGTAGGGTTCAGGACAATGCTTTTGACGCGGAGGTTGAGACTTTGGGCAAGATCAGGCACAAGAATATAGTCAAGCTGTGGTATAGGATATTACATGCTTTAGAAACAGAATATGCATACACGCTTAGAGTGAATGAGAAGAGCGACATATACAGCTTTGGGGTTGTCATACTCGAGTTGGTTACTGGAAGACGCCCGGTGGACCCTGAATTTGGAGAGAAAGACGTAGTTAAGTGGGTGTGCACTACCTTGGACCAGAAAGGCGTGGACCATCTAATTGACTCAAGGCTTGATTCTTGTTTCAAAGAAGAAATTTGCAAGGTCTTCAACATTGGACTCATGTGCACTAGTCCTCTTCCTATAAACCGGCCTTCAATGAGAAGAGTAGTGAAGATGTTGCAAGAGGTGGGCACAGAGAACCAAACCAAGCCTGCCAAAAAAGATGGGAAGCTATCCCCTTATTACTATGACGATGCCTCGGATCATGGAAGTGTTGCTTAA 2694 0.5097 MTQPLPIVVYVLLSVVAFVSCLNQEGLYLYQLKLSLDDPDSTLSSWNPRDATPCNWYGVTCAGDASNTTVTELDLSDTNIGGPFPANILCRLPNLLSINFFNNSINQTLPLDISLCRSLRHLDLSQNLLTGPLPATLPLLPNLRYLDLTGNNFSGPIPDSFGTFQNLQVLSLVSNLLEGTIPPSLGNVSSLKMLNLSYNPFFPGRIPPELGNLTNLEVLWLTQCNLVGVIPTSLGNLNKLQDLDLALNDLYGSIPSSLTQLTSLTQIELYNNSLSGEFPRGMGNLTRLRLLDASMNHLTGKIPDELCSLPLESLNLYENRFEGELPASIADSENLYELRLFGNRLTGRLPANLGKNSPLRWLDVSSNQFWGPIPATLCDNGVLEELLVIYNLFSGEIPASLGTCQSLTRVRLGFNRLSGEVPAGIWGLPHVYLLELVDNSFSGSIARTIAGAGNLSLLILSKNNFSGTIPDEVGWLENLVQFSASDNKFTGSLPDSIVNLGQLGILDFHNNRLSGALPKGIRSWKKLNDLNLANNEIGGTIPDEIGGLSVLNFLDISSNRFSGKVPHGLQNLKLNQLNLSYNRLTGELPPLLAKDMYRSSFLGNPGLCGDLKGLCDGRGEAKNVGYVWLLRAIFVVATLVFLVGVVWFYFRYKNFQDAKRAIDKSKWTLMSFHKLGFSEDEILNCLDEDNVIGSGSSGKVYKVVLSSGEVVAVKKIWGGVRKEVESGDVEKGRVQDNAFDAEVETLGKIRHKNIVKLWYRILHALETEYAYTLRVNEKSDIYSFGVVILELVTGRRPVDPEFGEKDVVKWVCTTLDQKGVDHLIDSRLDSCFKEEICKVFNIGLMCTSPLPINRPSMRRVVKMLQEVGTENQTKPAKKDGKLSPYYYDDASDHGSVA 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03250 897 Gene3D Phosphorylase Kinase; domain 1 670 765 - -
Vian1g03250 897 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 771 866 - -
Vian1g03250 897 Gene3D Transferase(Phosphotransferase) domain 1 766 892 - -
Vian1g03250 897 FunFam Leucine-rich receptor-like protein kinase family protein 206 304 - -
Vian1g03250 897 FunFam Receptor-like protein kinase HSL1 670 768 - -
Vian1g03250 897 Pfam Leucine Rich Repeat 118 137 IPR001611 GO:0005515
Vian1g03250 897 SUPERFAMILY L domain-like 333 590 - -
Vian1g03250 897 ProSitePatterns Protein kinases ATP-binding region signature. 692 715 IPR017441 GO:0005524
Vian1g03250 897 ProSiteProfiles Protein kinase domain profile. 686 897 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03250 897 SUPERFAMILY Protein kinase-like (PK-like) 683 870 IPR011009 -
Vian1g03250 897 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 22 188 - -
Vian1g03250 897 SUPERFAMILY L domain-like 38 373 - -
Vian1g03250 897 Pfam Leucine rich repeat N-terminal domain 23 61 IPR013210 -
Vian1g03250 897 MobiDBLite consensus disorder prediction 868 897 - -
Vian1g03250 897 Gene3D Ribonuclease Inhibitor 20 202 IPR032675 -
Vian1g03250 897 FunFam Receptor-like protein kinase HSL1 310 617 - -
Vian1g03250 897 Gene3D Ribonuclease Inhibitor 203 260 IPR032675 -
Vian1g03250 897 Gene3D Ribonuclease Inhibitor 261 332 IPR032675 -
Vian1g03250 897 Gene3D Ribonuclease Inhibitor 333 617 IPR032675 -
Vian1g03250 897 MobiDBLite consensus disorder prediction 872 886 - -
Vian1g03250 897 Pfam Leucine Rich repeat 66 82 IPR001611 GO:0005515
Vian1g03250 897 SMART LRR_typ_2 164 188 IPR003591 -
Vian1g03250 897 SMART LRR_typ_2 285 309 IPR003591 -
Vian1g03250 897 SMART LRR_typ_2 92 116 IPR003591 -
Vian1g03250 897 SMART LRR_typ_2 500 524 IPR003591 -
Vian1g03250 897 SMART LRR_typ_2 213 236 IPR003591 -
Vian1g03250 897 SMART LRR_typ_2 237 261 IPR003591 -
Vian1g03250 897 SMART LRR_typ_2 140 163 IPR003591 -
Vian1g03250 897 Pfam Leucine rich repeat 141 200 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03250 Vian-Chr1 54082386 54085836 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03250 768 897 Receptor kinase-like Gene Family AT1G28440 73.881 2.62e-58 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vian1g03250 LRR_8 1.3e-09 CL0022
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03250 - - gmx:100819887 1310.05