Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vian1g03250 | ATGACCCAACCACTCCCCATCGTCGTTTACGTTCTGTTATCGGTAGTAGCTTTCGTATCGTGTCTCAACCAAGAAGGGCTTTACCTTTACCAACTCAAGCTGTCTCTCGACGACCCTGATTCTACTCTCTCCTCCTGGAACCCCAGGGACGCCACCCCTTGCAACTGGTATGGTGTAACCTGCGCCGGCGATGCCTCCAACACCACTGTTACAGAATTGGACCTTTCCGACACCAACATCGGAGGCCCATTCCCTGCCAACATCCTCTGTCGTCTCCCCAACCTCCTCTCCATAAACTTCTTCAACAACTCCATCAACCAAACCCTCCCTCTCGACATCTCCCTCTGCCGCTCTCTCCGCCACCTCGACCTCTCCCAGAACCTCCTCACCGGTCCCCTCCCCGCCACGCTCCCGCTTCTCCCCAACCTCCGCTACCTCGACCTCACCGGCAACAACTTCTCCGGCCCAATCCCGGACTCCTTCGGAACCTTCCAGAACCTCCAGGTGCTCTCCCTCGTCTCCAATCTTCTAGAAGGTACCATCCCCCCCTCGTTGGGCAACGTCTCCTCTTTGAAAATGCTCAACCTCTCTTACAACCCCTTCTTCCCGGGTCGGATCCCTCCGGAGCTCGGCAACCTCACCAACCTCGAGGTTCTCTGGCTCACCCAATGCAACCTTGTCGGCGTCATTCCGACCTCCCTCGGGAACCTCAACAAGCTCCAGGACCTCGACCTCGCGCTCAATGACCTCTACGGCTCCATCCCGAGTTCGCTCACTCAGTTAACCAGCCTCACGCAGATCGAGTTGTACAACAACTCGCTCTCCGGGGAGTTCCCTCGGGGAATGGGGAATCTCACCCGCTTGAGGCTCCTCGACGCCTCCATGAACCACTTAACGGGGAAGATTCCCGACGAGCTTTGTTCTTTGCCGTTGGAGAGTCTTAATTTGTATGAAAACCGTTTCGAGGGAGAGTTACCGGCCAGCATTGCGGATTCCGAGAATCTTTACGAGCTTCGACTCTTCGGTAACCGCCTCACCGGCAGGTTACCGGCGAATCTTGGCAAGAATTCGCCGCTCCGGTGGCTGGACGTTTCGAGCAACCAGTTCTGGGGGCCTATTCCGGCGACGCTCTGTGATAATGGTGTTCTTGAGGAGCTTCTGGTGATTTATAATCTTTTCTCTGGGGAGATTCCGGCGAGCTTAGGCACGTGCCAGAGCTTGACACGTGTGAGACTAGGATTTAACCGGTTGTCCGGCGAGGTTCCCGCCGGCATCTGGGGGCTTCCGCACGTGTATCTTCTCGAGCTTGTCGACAACTCGTTTTCGGGTTCCATTGCGAGGACCATTGCGGGTGCCGGGAACTTGTCGCTGTTGATTTTGTCGAAGAATAACTTCTCGGGAACGATTCCCGATGAGGTTGGGTGGTTGGAGAATCTCGTGCAGTTTTCCGCCAGTGATAATAAGTTCACTGGCTCGCTTCCTGATAGCATTGTGAATCTTGGGCAGCTTGGGATTCTCGATTTTCATAATAACAGACTCTCTGGGGCGTTGCCGAAAGGGATTCGTTCGTGGAAGAAGCTCAACGATTTGAATTTGGCCAACAATGAGATTGGTGGTACGATTCCTGATGAGATTGGGGGTTTGTCCGTGCTGAACTTTCTAGATATTTCTAGCAACCGCTTTTCCGGGAAAGTCCCCCACGGGTTGCAGAATCTCAAGCTGAATCAGCTTAACTTGTCTTATAACCGTCTGACGGGTGAACTTCCCCCTCTCTTGGCTAAGGATATGTATAGGTCTAGTTTCCTTGGTAATCCTGGCTTGTGTGGAGATTTGAAGGGCTTGTGTGATGGTAGGGGTGAGGCAAAGAATGTAGGTTATGTTTGGCTGCTTCGAGCGATTTTTGTTGTAGCCACTTTGGTTTTCCTTGTAGGTGTGGTTTGGTTTTACTTTAGGTATAAGAATTTCCAGGACGCCAAGAGGGCGATTGATAAGTCAAAGTGGACGTTGATGTCGTTTCATAAACTGGGTTTTAGTGAAGATGAGATTTTGAATTGTCTTGATGAGGATAATGTGATAGGAAGTGGTTCCTCGGGTAAGGTTTACAAGGTTGTGCTTAGCAGTGGGGAGGTTGTTGCTGTGAAGAAGATATGGGGAGGGGTTAGGAAGGAGGTAGAGAGTGGGGATGTTGAAAAGGGTAGGGTTCAGGACAATGCTTTTGACGCGGAGGTTGAGACTTTGGGCAAGATCAGGCACAAGAATATAGTCAAGCTGTGGTATAGGATATTACATGCTTTAGAAACAGAATATGCATACACGCTTAGAGTGAATGAGAAGAGCGACATATACAGCTTTGGGGTTGTCATACTCGAGTTGGTTACTGGAAGACGCCCGGTGGACCCTGAATTTGGAGAGAAAGACGTAGTTAAGTGGGTGTGCACTACCTTGGACCAGAAAGGCGTGGACCATCTAATTGACTCAAGGCTTGATTCTTGTTTCAAAGAAGAAATTTGCAAGGTCTTCAACATTGGACTCATGTGCACTAGTCCTCTTCCTATAAACCGGCCTTCAATGAGAAGAGTAGTGAAGATGTTGCAAGAGGTGGGCACAGAGAACCAAACCAAGCCTGCCAAAAAAGATGGGAAGCTATCCCCTTATTACTATGACGATGCCTCGGATCATGGAAGTGTTGCTTAA | 2694 | 0.5097 | MTQPLPIVVYVLLSVVAFVSCLNQEGLYLYQLKLSLDDPDSTLSSWNPRDATPCNWYGVTCAGDASNTTVTELDLSDTNIGGPFPANILCRLPNLLSINFFNNSINQTLPLDISLCRSLRHLDLSQNLLTGPLPATLPLLPNLRYLDLTGNNFSGPIPDSFGTFQNLQVLSLVSNLLEGTIPPSLGNVSSLKMLNLSYNPFFPGRIPPELGNLTNLEVLWLTQCNLVGVIPTSLGNLNKLQDLDLALNDLYGSIPSSLTQLTSLTQIELYNNSLSGEFPRGMGNLTRLRLLDASMNHLTGKIPDELCSLPLESLNLYENRFEGELPASIADSENLYELRLFGNRLTGRLPANLGKNSPLRWLDVSSNQFWGPIPATLCDNGVLEELLVIYNLFSGEIPASLGTCQSLTRVRLGFNRLSGEVPAGIWGLPHVYLLELVDNSFSGSIARTIAGAGNLSLLILSKNNFSGTIPDEVGWLENLVQFSASDNKFTGSLPDSIVNLGQLGILDFHNNRLSGALPKGIRSWKKLNDLNLANNEIGGTIPDEIGGLSVLNFLDISSNRFSGKVPHGLQNLKLNQLNLSYNRLTGELPPLLAKDMYRSSFLGNPGLCGDLKGLCDGRGEAKNVGYVWLLRAIFVVATLVFLVGVVWFYFRYKNFQDAKRAIDKSKWTLMSFHKLGFSEDEILNCLDEDNVIGSGSSGKVYKVVLSSGEVVAVKKIWGGVRKEVESGDVEKGRVQDNAFDAEVETLGKIRHKNIVKLWYRILHALETEYAYTLRVNEKSDIYSFGVVILELVTGRRPVDPEFGEKDVVKWVCTTLDQKGVDHLIDSRLDSCFKEEICKVFNIGLMCTSPLPINRPSMRRVVKMLQEVGTENQTKPAKKDGKLSPYYYDDASDHGSVA | 897 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vian1g03250 | 897 | Gene3D | Phosphorylase Kinase; domain 1 | 670 | 765 | - | - | |
Vian1g03250 | 897 | PANTHER | LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED | 771 | 866 | - | - | |
Vian1g03250 | 897 | Gene3D | Transferase(Phosphotransferase) domain 1 | 766 | 892 | - | - | |
Vian1g03250 | 897 | FunFam | Leucine-rich receptor-like protein kinase family protein | 206 | 304 | - | - | |
Vian1g03250 | 897 | FunFam | Receptor-like protein kinase HSL1 | 670 | 768 | - | - | |
Vian1g03250 | 897 | Pfam | Leucine Rich Repeat | 118 | 137 | IPR001611 | GO:0005515 | |
Vian1g03250 | 897 | SUPERFAMILY | L domain-like | 333 | 590 | - | - | |
Vian1g03250 | 897 | ProSitePatterns | Protein kinases ATP-binding region signature. | 692 | 715 | IPR017441 | GO:0005524 | |
Vian1g03250 | 897 | ProSiteProfiles | Protein kinase domain profile. | 686 | 897 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vian1g03250 | 897 | SUPERFAMILY | Protein kinase-like (PK-like) | 683 | 870 | IPR011009 | - | |
Vian1g03250 | 897 | FunFam | LRR receptor-like serine/threonine-protein kinase ERL1 | 22 | 188 | - | - | |
Vian1g03250 | 897 | SUPERFAMILY | L domain-like | 38 | 373 | - | - | |
Vian1g03250 | 897 | Pfam | Leucine rich repeat N-terminal domain | 23 | 61 | IPR013210 | - | |
Vian1g03250 | 897 | MobiDBLite | consensus disorder prediction | 868 | 897 | - | - | |
Vian1g03250 | 897 | Gene3D | Ribonuclease Inhibitor | 20 | 202 | IPR032675 | - | |
Vian1g03250 | 897 | FunFam | Receptor-like protein kinase HSL1 | 310 | 617 | - | - | |
Vian1g03250 | 897 | Gene3D | Ribonuclease Inhibitor | 203 | 260 | IPR032675 | - | |
Vian1g03250 | 897 | Gene3D | Ribonuclease Inhibitor | 261 | 332 | IPR032675 | - | |
Vian1g03250 | 897 | Gene3D | Ribonuclease Inhibitor | 333 | 617 | IPR032675 | - | |
Vian1g03250 | 897 | MobiDBLite | consensus disorder prediction | 872 | 886 | - | - | |
Vian1g03250 | 897 | Pfam | Leucine Rich repeat | 66 | 82 | IPR001611 | GO:0005515 | |
Vian1g03250 | 897 | SMART | LRR_typ_2 | 164 | 188 | IPR003591 | - | |
Vian1g03250 | 897 | SMART | LRR_typ_2 | 285 | 309 | IPR003591 | - | |
Vian1g03250 | 897 | SMART | LRR_typ_2 | 92 | 116 | IPR003591 | - | |
Vian1g03250 | 897 | SMART | LRR_typ_2 | 500 | 524 | IPR003591 | - | |
Vian1g03250 | 897 | SMART | LRR_typ_2 | 213 | 236 | IPR003591 | - | |
Vian1g03250 | 897 | SMART | LRR_typ_2 | 237 | 261 | IPR003591 | - | |
Vian1g03250 | 897 | SMART | LRR_typ_2 | 140 | 163 | IPR003591 | - | |
Vian1g03250 | 897 | Pfam | Leucine rich repeat | 141 | 200 | IPR001611 | GO:0005515 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vian1g03250 | Vian-Chr1 | 54082386 | 54085836 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vian1g03250 | 768 | 897 | Receptor kinase-like Gene Family | AT1G28440 | 73.881 | 2.62e-58 | 214 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-XI-1 | Vian1g03250 | LRR_8 | 1.3e-09 | CL0022 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vian1g03250 | - | - | gmx:100819887 | 1310.05 |