Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03247 ATGGAGGGAGAGGCTTGTTCCGAGGGAGAGAATAATCGGAAAAGGGGTGGCACAGACGATGATAGCAATGAGAATAACAACAACAACGACAGCAATCACGGAATTAGTAGCAAAATTGTGAATTCTAATGAGGGGCAGAGCAAGCCCAAGCGCCAGATGAAAACCCCTTTTCAACTTGAAACCCTCGAGAAGGCTTATGCTGTGGATAATTATCCGTCGGAGACGATGAGGGGAGAACTTTCTGAGAAATTGGGTTTGTCGGATCGGCAGCTTCAGATGTGGTTCTGCCATAGGAGGTTGAAGGACAAGAAGGACTTGACGTCCAAGAAAGTGCCACGGAAGGTGGTGGCAGAACCTTTGCCGGAATCACCTACAGATGACCCCATGCTTAGCCCCCCGGAGCTTGGTAATGAGTATGGATCCGGGTCCGGTTCAGGGTCCAGCCCTTATGCCCGAGTGGAGCCCCTGAACATTGTTCCCCGGGGTGTGCCTGGTTATTACGAGTCCCCACGGGCTATGATGGAGAGTAGAGCAATTGCTTGTGTTGAGGCGCAGTTAGGGGAGCCGTTGAGGGAAGATGGACCAATTCTAGGAGTAGAGTTTGATCCATTGCCACCAGATGCCTTTGGAGCACCTTTAGCTACCGAACAGCAGAAGCTACCTAGTTTCGCCTATGACAGTAAAATATATGAAAGACATGATAGTAGAGCCAATAAGGCTATGGCAAGGACATTTCGTGACTATCGATCTCTTCCAACCCAGGCTGGCACTAGGTCTGATACTTCTGGACCGTTCAGCAAATCTCATTTACATGATGCAATGGAAGGTCCTGCCAGAAATCTTCATTTGGCCCTTGGAAATGAAACTGTACCTAGAATTCGTCCTAGTCAAGGTCAATTCCGTGCTCGTCTTTTGTCGCAACAAGATAAGCAATTGATTCCATATCAGTCTCCTACGCGGGATGATAATGCTGCCCCAACTAGGGAATTGGACCCAACCATACTTAATGTTGGAACGAGCTCTCACTTTGCTGATCACCAAATTGTTGTGCCCGAAAATCTCCATGCTCAACCTAGTGGTCAAGTTTTGCATAACAACAATGCAATACGGATTGAGAAGAAACGAAAGAGTGATGATGTTCGTGATGTAGAAGCGCATGAGATGAAAATCCGGAAAGAGATTGAGAAGCAAGATAACCTTAGACGAAAGAATGAAGAAAGGATGAGAAAAGAAATAGAGAAACAAGATCGTGAAAGAAAGAAGGAAGAAGAGAGGTTAATGCGTGAGAGACAACGAGAAGAGGAAAAAGTAAGACGGGAACAAAAACGCGAAATTGAGCGAAGGGAAAAGTTTTTGCTGAAAGAAAATATAAGAGCAGAAAAAATGAAGATAAGAGAAGAGCTTCGCAAAGAGAAAGAAGCAGAGAGAAGGAAAGCTGCCCTTGAGAAGGCTACTGCTCGTAGAATAGCTAAGGAATCTATGGAACTTATTGAGGATGAACATCTGGAAATGATGGAGTTGGCTGCCTCAAGCAAGGGGTTTTCCTCTATTATTCACCTTGATTTTGATACTCTGCAACATATTGAGTCATTTAGGGATTCATTGTGTGTTTTCCCACCAAAGAGTGTCAAGCTAAGAAAACCATTTGCAATCAAACCGTGGATCAACTCAGAGAAGAATGTTGGCAATCTTCTCATGGTTTGGAGATTTTTGATTACTTTTGCTGATGTTCTGGAGTTATGGTCTTTTACTCTAGATGAGTTTGTTCAAGCATTTCATGACTATGATTCAAGACTATTGGGTGAGATACATGTTGCTCTTCTTAAGGTGGTAATAAAAGACATTGAAGATGTTGCAAGGACACCTTCTACTGGATTAGGATCGAATCAAAACGGTGCTGCTAACGCCGGAGGTGGTCATCCAGAGATTGTGGAAGGCGCATATGCATGGGGCTTTGACATACGGAATTGGCATAAGCACTTGAATCTATTGACATGGCCAGAAATTTTCCGACAGCTAGCTTTATCTGCCGGATATGGACCACAGTTAAAGAAAAGAAGTGCTACCTGTTCATATGCAAATAATAAAGACGAGGGAAGAAGTTGTGAAGATATCATTTCTAAACTTCGTAATGGTTCAGCGGCTGAAAATGCAGTTGCAAAAATGCATGAGAGAGGTCTGTTAGCCCCTCGAAGATCTAGACATCGATTAACTCCTGGTACAGTTAAATTTGCAGCATTTCATGTTCTATCCCTTGAGGGTGACAAGGGATTGACAGTACTAGAGCTTGCAGAAAAAATTCAGAAATCTGGTCTTCGAGATCTGACAACCAGCAAGACACCTGAGGCATCAATTTCTGTTGCTTTAACAAGAGATACCAAGCTTTTTGAAAGAATAGCTCCGTCAACATATTGTGTACGTCAGGCATTTAGAAAGAACCCTGCTGATGCCGAGTCCATTCTTTCAGAAGCAAGAAAGAAAATTCAGATATTTGAAAATGGGTTTCTAGCTGAGGAGGATACTGATGATGTTGAAAGAGAAGAGTCAGAGAGTGATGAAATTGACGAGGACCCTGAAGTTGATGATTTGGTAAATTCGTCAAGTGCAAACAAAACATCTGAACCGTGTGATGATTTCTCATCAAATGGAAAAGAAAATTTGGGCCATGATGTTGGACTTCAGGGTGAGTTTGATAAGGATCTGCCTCATTTTCCTGAGAGTTCTTCCAAGAAGGTTGATACTCCAATTGCTGTAACCGGGAGGAAACCTGGGGCTTGTGAAGTTTTGAACGTTGGAAATCTTGGTGAAGATAATATGGAAATTGATGAAAGCAAGCCTGGAGAATCATGGGTTCAAGGGCTTGCAGAAGGAGAATATTCTGACCTCAGTGTAGAGGAGCGTCTAAGTGCCCTTGTTGTGTTGGTTGGTGTGGCAAATGAAGGAAATTCAATCCGTGTTGTTCTTGAGGATCGTTTGGAAGCAGCAAATGCTCTGAAGAAACAAATGTGGGCAGAAGCACAACTGGATAAATTTCGATTAAAAGATGATATTTTCAGTAAATCTGATTTTCCATCTCTCAATGGGAATAAAGTTGAAATACAATACTCTTGTCCTGCCGCAGAGGGAAACCAAAGCCCTTCATTGCTTGGTATTAATATTGGCAACAATAGTAATATTGTGCCCTCTCCCAGCACTGCAGAAAATCAAAAAGCCACTCCAGGTGTACAGAGCCTGTCTGTTGAAAAACACTCTTCAGTTCAAGATCTTTGCACTGGCCCAGATAACCCTCAGATTCAGACATTTGCACAGTATTCAAAAAGGTCACGGTCTCAGCTGAAATCTTATATTTTCCACATAGCAGAGAAGATGTGTGCCTACAGATCCTTACCCCTTGGGCAAGATCGAAGACGTAACCGTTATTGGCAATTCGTTGCATCTGCTTCTTCCAATGATCCTGGCTCTGGCCGGATCTTTGTCGAATTTCTTGATGGCAATTGGAGGCTTATTGATACTGAAGAGGCCTTTGATGCGCTTCTGAATTCCCTTGATTCGCGTGGGGTCAGGGAATCTCATTTGCGACTAATGTTGCAAAAGGTTGAGGGTTCCTTTAAGGAAAATGTTCATAATAATACACAATGTTCTAAAGCTGGAAGCAGAGGCGAAACATGTGTTAAAAATGAAGCTGACGAAACAGATTCCAGTCCTGATCGTCATACTGGATCTGACAGCCCCAGTAGTACCCTTTGTGGCCTGAACTCCGACAGTTTGGAAACTTCCTCATCCTTCAAAATTGAGCTTGGGAAAAGTGAGAGCGACAAGAAATCTGCCTTGAGAAGGTATCAAGATTTTCAAAAGTGGACATGGAAAGAATGCTATAATTCATCAATATTATGTGCCATGAAATACGGGAAGAAAAGATGCAAACCTCAGGTTGTCGTCTGTGATATCTGTCTCAATCCTTATTTCTATGAAGACTCCCATTGCAGTTGTTGCCACAGAACTTTTCCCTCAAATAATGGATTTAATTTTTCTAAACACGCATTTCAATGTGGAGACAAATTATCAAAAGAGATTTGTATTTTGGATTCGTCTCTTCCCTTACGGACAAGATTGCTTAAGGCCCTGCTAGCTTATATTGAGGTTTCCATTCCACCCGAAGCATTTCAATCAACTTGGATCGAAGATATTAGGAGGCATTGGAGTGTGAAGTTGAGCAAAACATCTTCTGTAGAGGAACTACTACAGATATTGGCCCTACTCGAGAGAGCATTGAAGCGGGACTTTCTATCATCAACCTTCTCTACAACAGGGGAACAGTTGGGGTTGAACACTATGTCAGAGAGTGCTGCACAAACCTCTGCCGATCCTGAATCAGTTGCTGTACTTCCATGGGTTCCACTGACCACTTCAGCCGTGTCTCTCAGACTTTTTGAGTTTGATGAATCAATTGTCTACGTACTGCATGAAAAACCTGAACCTCGTGAGGAGAAAGAAGATAGGCAGTACATAAAGCTTCCTTCAAGACACAGTGCTTCCAAATCAATTAAAGTTTCTGAAACAGCCGACATGGGACGTGATGAATTCATGAAGGTTAAATCTAATACTGTGAAAATTGTGCAAAGCAACAATAAACGAGGACGAGGTAGTGCTCTCAAAGGACGGAGTAAAAGTATATCTAAAACCAAACAAAATAATGGCCGTCGGCACAGTGCAAAGGTTGCTGGGAATCTAAATCAAAGGGTAAAACAACAGGGAGGGGGATCACAAGGACAAGCTGGTGGACGTGGTCGTCGAACAGTCCGGAAAAGAAGAATGGGGAAAAAGGCTGTTGAAGATCTGTTGCTAGGCCATAGGGGTGCCTCTCGTAACAACAACATTGCTAGAGAATCATTAAGAAACTTGGATGAGGATTGGGATGATCAAAAAGGAAGTCCCATGACTCCTATCCATATGGGAACTGCTAACATTAGTAACAGCACTGAAGAGGCTGAATCTGATGACAATGTCCAAGCAATGGAGTCTGATGACAATGTCCAAGCAGTGGAGTCTGATGACAATGGCCAAGCAGTGGAATCTGATGACAATGGTCAAGCAATGGAATCTGATGACAATGGACAAGCAGTAGAATCTGATGACAATGGCCAAGCTGTGGAATATGATCAAGGAAACTGGGAAATAGGTTTTAATGGTAATCCCAGCCGATGGCAGGGGGATCTGGTTGGAACAAGTGATGAAGATGTTGAAGCTTCTGAAGATGACAATCACAATGACAATGGCATTGAAGAGAATGAAGAGGAGGATTCAGAGGGAGATGTTATGAGCGAGGGTTCAGATGGTACTGCAAACAGAATTGTAAATGAAGAAGAAAGCTCAGATTCAGATGTCTCTGAAGATTCATCTGATTAG 5406 0.4292 MEGEACSEGENNRKRGGTDDDSNENNNNNDSNHGISSKIVNSNEGQSKPKRQMKTPFQLETLEKAYAVDNYPSETMRGELSEKLGLSDRQLQMWFCHRRLKDKKDLTSKKVPRKVVAEPLPESPTDDPMLSPPELGNEYGSGSGSGSSPYARVEPLNIVPRGVPGYYESPRAMMESRAIACVEAQLGEPLREDGPILGVEFDPLPPDAFGAPLATEQQKLPSFAYDSKIYERHDSRANKAMARTFRDYRSLPTQAGTRSDTSGPFSKSHLHDAMEGPARNLHLALGNETVPRIRPSQGQFRARLLSQQDKQLIPYQSPTRDDNAAPTRELDPTILNVGTSSHFADHQIVVPENLHAQPSGQVLHNNNAIRIEKKRKSDDVRDVEAHEMKIRKEIEKQDNLRRKNEERMRKEIEKQDRERKKEEERLMRERQREEEKVRREQKREIERREKFLLKENIRAEKMKIREELRKEKEAERRKAALEKATARRIAKESMELIEDEHLEMMELAASSKGFSSIIHLDFDTLQHIESFRDSLCVFPPKSVKLRKPFAIKPWINSEKNVGNLLMVWRFLITFADVLELWSFTLDEFVQAFHDYDSRLLGEIHVALLKVVIKDIEDVARTPSTGLGSNQNGAANAGGGHPEIVEGAYAWGFDIRNWHKHLNLLTWPEIFRQLALSAGYGPQLKKRSATCSYANNKDEGRSCEDIISKLRNGSAAENAVAKMHERGLLAPRRSRHRLTPGTVKFAAFHVLSLEGDKGLTVLELAEKIQKSGLRDLTTSKTPEASISVALTRDTKLFERIAPSTYCVRQAFRKNPADAESILSEARKKIQIFENGFLAEEDTDDVEREESESDEIDEDPEVDDLVNSSSANKTSEPCDDFSSNGKENLGHDVGLQGEFDKDLPHFPESSSKKVDTPIAVTGRKPGACEVLNVGNLGEDNMEIDESKPGESWVQGLAEGEYSDLSVEERLSALVVLVGVANEGNSIRVVLEDRLEAANALKKQMWAEAQLDKFRLKDDIFSKSDFPSLNGNKVEIQYSCPAAEGNQSPSLLGINIGNNSNIVPSPSTAENQKATPGVQSLSVEKHSSVQDLCTGPDNPQIQTFAQYSKRSRSQLKSYIFHIAEKMCAYRSLPLGQDRRRNRYWQFVASASSNDPGSGRIFVEFLDGNWRLIDTEEAFDALLNSLDSRGVRESHLRLMLQKVEGSFKENVHNNTQCSKAGSRGETCVKNEADETDSSPDRHTGSDSPSSTLCGLNSDSLETSSSFKIELGKSESDKKSALRRYQDFQKWTWKECYNSSILCAMKYGKKRCKPQVVVCDICLNPYFYEDSHCSCCHRTFPSNNGFNFSKHAFQCGDKLSKEICILDSSLPLRTRLLKALLAYIEVSIPPEAFQSTWIEDIRRHWSVKLSKTSSVEELLQILALLERALKRDFLSSTFSTTGEQLGLNTMSESAAQTSADPESVAVLPWVPLTTSAVSLRLFEFDESIVYVLHEKPEPREEKEDRQYIKLPSRHSASKSIKVSETADMGRDEFMKVKSNTVKIVQSNNKRGRGSALKGRSKSISKTKQNNGRRHSAKVAGNLNQRVKQQGGGSQGQAGGRGRRTVRKRRMGKKAVEDLLLGHRGASRNNNIARESLRNLDEDWDDQKGSPMTPIHMGTANISNSTEEAESDDNVQAMESDDNVQAVESDDNGQAVESDDNGQAMESDDNGQAVESDDNGQAVEYDQGNWEIGFNGNPSRWQGDLVGTSDEDVEASEDDNHNDNGIEENEEEDSEGDVMSEGSDGTANRIVNEEESSDSDVSEDSSD 1801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03247 1801 MobiDBLite consensus disorder prediction 837 885 - -
Vian1g03247 1801 MobiDBLite consensus disorder prediction 1222 1237 - -
Vian1g03247 1801 MobiDBLite consensus disorder prediction 1238 1253 - -
Vian1g03247 1801 MobiDBLite consensus disorder prediction 1210 1253 - -
Vian1g03247 1801 Pfam DDT domain 560 614 IPR018501 -
Vian1g03247 1801 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 36 1800 IPR044977 GO:0006357
Vian1g03247 1801 Coils Coil 383 443 - -
Vian1g03247 1801 ProSiteProfiles DDT domain profile. 558 617 IPR018501 -
Vian1g03247 1801 Gene3D - 33 107 - -
Vian1g03247 1801 SUPERFAMILY Homeodomain-like 34 104 IPR009057 -
Vian1g03247 1801 SMART testlast3 558 617 IPR018501 -
Vian1g03247 1801 MobiDBLite consensus disorder prediction 1744 1773 - -
Vian1g03247 1801 MobiDBLite consensus disorder prediction 22 54 - -
Vian1g03247 1801 MobiDBLite consensus disorder prediction 1 57 - -
Vian1g03247 1801 MobiDBLite consensus disorder prediction 1672 1711 - -
Vian1g03247 1801 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1127 1199 IPR028941 -
Vian1g03247 1801 MobiDBLite consensus disorder prediction 863 880 - -
Vian1g03247 1801 MobiDBLite consensus disorder prediction 252 272 - -
Vian1g03247 1801 MobiDBLite consensus disorder prediction 1541 1801 - -
Vian1g03247 1801 MobiDBLite consensus disorder prediction 1541 1560 - -
Vian1g03247 1801 SMART HOX_1 47 109 IPR001356 GO:0003677
Vian1g03247 1801 MobiDBLite consensus disorder prediction 1629 1643 - -
Vian1g03247 1801 ProSiteProfiles HARE-type HTH domain profile. 740 809 IPR007759 GO:0006355
Vian1g03247 1801 MobiDBLite consensus disorder prediction 400 441 - -
Vian1g03247 1801 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 947 989 IPR028942 -
Vian1g03247 1801 MobiDBLite consensus disorder prediction 1 21 - -
Vian1g03247 1801 Pfam HB1, ASXL, restriction endonuclease HTH domain 740 808 IPR007759 GO:0006355
Vian1g03247 1801 Pfam Homeodomain 48 104 IPR001356 GO:0003677
Vian1g03247 1801 MobiDBLite consensus disorder prediction 837 862 - -
Vian1g03247 1801 MobiDBLite consensus disorder prediction 1568 1590 - -
Vian1g03247 1801 ProSiteProfiles 'Homeobox' domain profile. 45 105 IPR001356 GO:0003677
Vian1g03247 1801 MobiDBLite consensus disorder prediction 252 266 - -
Vian1g03247 1801 MobiDBLite consensus disorder prediction 1648 1665 - -
Vian1g03247 1801 Coils Coil 454 485 - -
Vian1g03247 1801 MobiDBLite consensus disorder prediction 114 152 - -
Vian1g03247 1801 CDD homeodomain 50 104 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03247 Vian-Chr1 54012656 54022341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03247 41 1731 Homeobox Transcription Factor Family AT1G28420 47.493 0.0 1296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vian1g03247 WSD 2.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03247 - - gmx:100818817 2734.13