Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03234 ATGCAAATCTTCGTTAAGACTCTCACCGGTAAGACCATCACTCTCGAAGTAGAGAGCTCAGATACCATTGATAATGTGAAAGCCAAGATTCAAGACAAGGAAGGAATCCCACCGGACCAGCAACGTCTCATTTTTGCTGGCAAACAGCTTGAGGATGGTCGTACCCTTGCTGATTACAACATTCAAAAGGAGTCCACCCTCCACCTGGTGCTCCGTCTCCGTGGTGGAATGCAAATCTTTGTCAAGACCCTCACCGGAAAGACCATCACCCTTGAGGTCGAAAGCTCTGACACTATAGACAATGTCAAGGCCAAGATTCAAGACAAGGAGGGTATCCCACCAGACCAGCAGAGGCTCATATTTGCCGGAAAGCAACTAGAAGATGGCCGAACCTTGGCAGATTATAACATTCAGAAAGAATCAACTCTCCATCTTGTCTTGCGACTCCGTGGTGGTATGCAGATTTTCGTCAAGACCCTTACTGGAAAAACAATTACTTTGGAGGTGGAGAGTTCAGACACGATTGACAATGTCAAGGCCAAGATACAGGACAAGGAGGGCATTCCTCCAGACCAGCAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAGGATGGACGTACTCTGGCTGATTATAACATTCAGAAGGAGTCCACTCTTCATCTTGTACTTCGTCTGAGGGGAGGTATGCAGATCTTTGTGAAGACTTTAACAGGGAAGACTATCACTTTGGAGGTTGAAAGCTCAGATACAATTGATAACGTCAAGGCAAAAATCCAGGACAAGGAAGGAATCCCACCAGATCAGCAGAGGTTGATCTTTGCTGGGAAGCAATTGGAGGATGGGAGGACTCTTGCTGATTACAACATTCAGAAAGAGTCCACCCTTCACCTGGTATTGCGTCTTCGTGGAGGGTTTTAA 918 0.4641 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03234 305 FunFam Polyubiquitin 3 77 152 - -
Vian1g03234 305 Gene3D - 77 152 - -
Vian1g03234 305 Gene3D - 229 305 - -
Vian1g03234 305 Gene3D - 153 228 - -
Vian1g03234 305 Gene3D - 1 76 - -
Vian1g03234 305 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Vian1g03234 305 Pfam Ubiquitin family 231 302 IPR000626 GO:0005515
Vian1g03234 305 Pfam Ubiquitin family 155 226 IPR000626 GO:0005515
Vian1g03234 305 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Vian1g03234 305 SUPERFAMILY Ubiquitin-like 76 152 IPR029071 -
Vian1g03234 305 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Vian1g03234 305 ProSiteProfiles Ubiquitin domain profile. 229 304 IPR000626 GO:0005515
Vian1g03234 305 CDD Ubl_ubiquitin 1 76 - -
Vian1g03234 305 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Vian1g03234 305 SUPERFAMILY Ubiquitin-like 228 304 IPR029071 -
Vian1g03234 305 CDD Ubl_ubiquitin 153 228 - -
Vian1g03234 305 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Vian1g03234 305 FunFam Polyubiquitin 3 229 304 - -
Vian1g03234 305 ProSiteProfiles Ubiquitin domain profile. 153 228 IPR000626 GO:0005515
Vian1g03234 305 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Vian1g03234 305 SMART ubq_7 229 300 IPR000626 GO:0005515
Vian1g03234 305 SMART ubq_7 1 72 IPR000626 GO:0005515
Vian1g03234 305 SMART ubq_7 77 148 IPR000626 GO:0005515
Vian1g03234 305 SMART ubq_7 153 224 IPR000626 GO:0005515
Vian1g03234 305 ProSitePatterns Ubiquitin domain signature. 255 280 IPR019954 -
Vian1g03234 305 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Vian1g03234 305 FunFam Polyubiquitin 3 153 228 - -
Vian1g03234 305 PANTHER UBIQUITIN 1 80 - -
Vian1g03234 305 SUPERFAMILY Ubiquitin-like 152 228 IPR029071 -
Vian1g03234 305 CDD Ubl_ubiquitin 77 152 - -
Vian1g03234 305 FunFam Polyubiquitin 3 1 76 - -
Vian1g03234 305 PRINTS Ubiquitin signature 32 52 IPR019956 -
Vian1g03234 305 PRINTS Ubiquitin signature 11 31 IPR019956 -
Vian1g03234 305 PRINTS Ubiquitin signature 53 74 IPR019956 -
Vian1g03234 305 ProSitePatterns Ubiquitin domain signature. 179 204 IPR019954 -
Vian1g03234 305 CDD Ubl_ubiquitin 229 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03234 Vian-Chr1 53890932 53891849 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03234 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 1.61e-48 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03234 K08770 - cave:132173694 590.882