Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03221 ATGGACGCAAGCAGGTCTGAGGGAAAGAGAGTCTTGAGGTACAGCGAGGAGGAGGAAGACGAAGAAGAAGAAGAAGAGGAAGAGGCTGAGACGGTTTTAGGAGACGATGGAAGGAGGAATAAGAGAGTAATGAGAGATCTCTATGGAAAGAAAGGATTCCATGAACTGTCTGAATTTGATGAATCGAAAAGGAGTTGTAGAACACGGTTGGTTGGTCATAACGAGAGGCGACGCAAAAATGCAGTTGACTATCGTGGAGATTAA 264 0.4508 MDASRSEGKRVLRYSEEEEDEEEEEEEEAETVLGDDGRRNKRVMRDLYGKKGFHELSEFDESKRSCRTRLVGHNERRRKNAVDYRGD 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03221 87 MobiDBLite consensus disorder prediction 17 31 - -
Vian1g03221 87 Pfam SBP domain 51 79 IPR004333 GO:0003677
Vian1g03221 87 ProSiteProfiles Zinc finger SBP-type profile. 1 80 IPR004333 GO:0003677
Vian1g03221 87 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 53 81 IPR044817 GO:0003677
Vian1g03221 87 Coils Coil 12 35 - -
Vian1g03221 87 MobiDBLite consensus disorder prediction 1 16 - -
Vian1g03221 87 SUPERFAMILY SBT domain 52 84 IPR036893 GO:0003677|GO:0005634
Vian1g03221 87 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03221 Vian-Chr1 53693167 53694554 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03221 53 83 SBP-box Gene Family AT2G33810 77.419 1.49e-11 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vian1g03221 SBP 1.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03221 - - gmx:100527199 80.4925