Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03220 ATGAGCATCTGCGTACAAGTACAGAAGATAGATGATCGCAAGGCCTCTATGGGAAGAGTCATGGAAAAACCAACCCAAGATCTTCTTCACCAGCAGCAACAAGCCCTCAAGTGCCCTCGCTGCGACTCTTCCAACACCAAGTTCTGCTACTACAACAACTACAGTTTGTCACAGCCCAGGCACTTCTGCAAAGCCTGCAAGCGATACTGGACCAGAGGTGGAACTCTTAGAAACGTTCCCGTTGGTGGTGGCTGCAGGAAAAACAAGCGTATCAAACGTCCAAACGGTGACGCTTCTTCTAACTCTCCTCCTTCTTCCTCCACTCCTATCTCCAATTCAAATCCTCCTTCACTGCCCCACATCCCTTCTACTTCAACCGCAAACCATATCAATGTAAACCCTTTGTTTTATGGCCTACCCAGTAATAACGCTTGTGATGTCATGGATGTTCCTTTCCCAAGGTTTAATCTTCAGTCTCAGCTGAGTGCCCTTGGGTTAGGTTTTTCATCCGGGGTTAACGTTATCTCAAACCAACCCAGTGATAATGGCTTTAGTGCTACTACTACCACTACTACTTCGAACACTGACAACTTTCTTTCTGCTTATAATTCCATCTTTGGTTCTTCTTCCTCCTCGACTTGTGCACCCACCACTCCTGTTATGGCTTCCTTGCTGAGTTCCACTCTCCTGCAACAGAAGTTTATCGGCGGTGCTGGGGTGAAGGGTGATCATGTTGGCAACGGTTTCCAGGGTTTGGCACCGCTACAAGGGTTGCAAATGGAAGGGAGTAATAATATTAGCTCAAAAGAAGTGAAAGCTGAGGGACCGAACAGGTTGGAGTTGGAGTGGAGTAATGGTAACAATAACAATGGTGGTGGCGGTGCTTGTCAAAACCAGATGGAGCATGTGGGCTTGTCTGATCCTAATTCGCTTTATTGGAACACCGCAACCAGTTTGAGTGCTTGGAGTGATCAACCTAACTTTGGTCCTTCGGTCACTTCTCTGATCTAG 1011 0.4718 MSICVQVQKIDDRKASMGRVMEKPTQDLLHQQQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRIKRPNGDASSNSPPSSSTPISNSNPPSLPHIPSTSTANHINVNPLFYGLPSNNACDVMDVPFPRFNLQSQLSALGLGFSSGVNVISNQPSDNGFSATTTTTTSNTDNFLSAYNSIFGSSSSSTCAPTTPVMASLLSSTLLQQKFIGGAGVKGDHVGNGFQGLAPLQGLQMEGSNNISSKEVKAEGPNRLELEWSNGNNNNGGGGACQNQMEHVGLSDPNSLYWNTATSLSAWSDQPNFGPSVTSLI 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03220 336 ProSitePatterns Zinc finger Dof-type signature. 38 74 IPR003851 GO:0003677|GO:0006355
Vian1g03220 336 MobiDBLite consensus disorder prediction 81 125 - -
Vian1g03220 336 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 26 200 IPR045174 GO:0003700|GO:0006355
Vian1g03220 336 MobiDBLite consensus disorder prediction 95 125 - -
Vian1g03220 336 Pfam Dof domain, zinc finger 34 90 IPR003851 GO:0003677|GO:0006355
Vian1g03220 336 ProSiteProfiles Zinc finger Dof-type profile. 36 90 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03220 Vian-Chr1 53665392 53670153 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03220 36 336 C2C2-Dof Transcription Factor Family AT1G28310 41.159 3.01e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vian1g03220 zf-Dof 1.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03220 - - vum:124826825 625.935