Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03216 ATGGACAACTTTCCTGTGCCGTTTTCAGCAGCCACCACCAACCCATTAATCCCTAATGTCTCTGGCACTACCTCTTTCTCTTCGAACATAATAATCCCAGCTCAACAAAACATGGCAGAACTAACAAATTTTAACTTCCCTGTTGACAAAACTGGAGAAATTGGCTTTCCTGATCCTTATTTCGGTCCATATGATCAAAACATGCACTTCCAACAAATGAATCCATATCCTTTGCATACCCTTCCAACACCACAACGAAATGGAATTTATGGACCACCAAATTCTGAAGTTCAAACCTCTGTGGGACCATTGACTAGCAAAGTTGCTAGGGACAAAAGGAAAAAAGTAAGACAGAAGAGTAAGAATGTTGCTCCTACGGCTCCTTTGGTTCCAACCAAAGGAACAAAGGAAAAACCTGTTTCTGGACGAGGAAAACTCACTATCAACCTAGATAGAACTACCACTGTTTTTTGCAGCCCAGATGGGAAGAAGTTAGAGCAAGTTTTCACAAAGCAGTTGAAGAATAGTGACGTTAGTGTCCTAGGTCGCATTGTGCTCCCAAAGAGGGAGGTTGAGGCGAAGCTTCCACCATTGACAGACAAGGAAGGAAAGGATATCATAGTCAAGGATGTTTATTCTGAGAAGATATGGTCCTTGAAATACAAGAAGCAGTATGTGTGGGCTAGAAAAATGAGAAATCTAGAAACACCGGTGTGCTCGTCAAACATGGAAAGCTCGAAAACATGCGAGACAGACAACCTTAACGACATGAAGCAATCTACAAATGAAGATGCATATTTGGAATTTTTTACAAAGCTGAACCGTAAGAAAGACGTTGAAGAAGCTAACAAGCTTTTGACTTCATTCAATGGTGGTGGAAGTTCTTCAAGTGGAGCAAAATCAGATATGAATATAGCACAGCATGATCTGTCGAACACTGCTGGGAAAGGGGCACCAAACCAAACAACTGCAGAAGCCACACCAACAGCACCAACAACACCCCTTGATGGCAATAACATGCCGATAAGTGATGAAGATGTCTATGGGGGCCTTGACAATATCTTCGAAATTGAGAATAGTTCATGGTTTTGA 1092 0.4176 MDNFPVPFSAATTNPLIPNVSGTTSFSSNIIIPAQQNMAELTNFNFPVDKTGEIGFPDPYFGPYDQNMHFQQMNPYPLHTLPTPQRNGIYGPPNSEVQTSVGPLTSKVARDKRKKVRQKSKNVAPTAPLVPTKGTKEKPVSGRGKLTINLDRTTTVFCSPDGKKLEQVFTKQLKNSDVSVLGRIVLPKREVEAKLPPLTDKEGKDIIVKDVYSEKIWSLKYKKQYVWARKMRNLETPVCSSNMESSKTCETDNLNDMKQSTNEDAYLEFFTKLNRKKDVEEANKLLTSFNGGGSSSSGAKSDMNIAQHDLSNTAGKGAPNQTTAEATPTAPTTPLDGNNMPISDEDVYGGLDNIFEIENSSWF 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03216 363 CDD B3_DNA 169 223 IPR003340 GO:0003677
Vian1g03216 363 Gene3D - 158 248 IPR015300 -
Vian1g03216 363 MobiDBLite consensus disorder prediction 91 143 - -
Vian1g03216 363 MobiDBLite consensus disorder prediction 310 344 - -
Vian1g03216 363 MobiDBLite consensus disorder prediction 91 105 - -
Vian1g03216 363 MobiDBLite consensus disorder prediction 310 339 - -
Vian1g03216 363 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 135 222 IPR044800 GO:0003700
Vian1g03216 363 SUPERFAMILY DNA-binding pseudobarrel domain 168 222 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03216 Vian-Chr1 53611039 53613486 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03216 161 222 B3 DNA Binding Superfamily AT1G28300 59.677 2.18e-16 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03216 K09287 - gmx:106797573 194.126