Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03215 ATGGCCGCACCTTCGCTTTCCTCCGCTCTCAATTCCCTCTCCCTCTCCACCTCTTCCCGCTTCTCTCTCCTCCCTTCGCCGCCGCACACCGTCTCCCTCCTCTTCGCCAAACCCCAACACCACCCCTCCCTCCTCTGCGCCAAATGCAAACCCTCCGATGACATCGACACCTCCTTCTTCGACAACGTCAACCCATTGGAAGACATTGACTTCAACCCCCCGGAGCCCCCGGAGGGATTTGTCGCCCCTCCCTCCTTCGACGATGGCCCCCTCGAGACGGAGGACGAGATCGCCGCAGCCTATGAGGAGCTCTACGGCCCCGCCTTCAGCGGCGTCTCCGTGCTCGGGAACGACGTCTTCGAAACGGACGCCCTGGTGAAGCAGGACACGGGGTTCGGGTCCGGCACGAAGAAGGAGAAGGTCCGCGACGGGTTCGAAGAGAGGGTGGTCCAGGTGAGGAGGGTGACGAAGGTTGTTAAGGGAGGGAAACAGTTGCGCTTCAGAGCTGTCGTCATTGTCGGCGACAAGAAGGGCCAAGTCGGCGTCGGAGTTGGCAAGGCCAAGGAAGTCGTCGCCGCCGTTCAGAAGTCCGCCTCCAATGCCAGGAGAAACATCGTGAAGGTGCCAATGACTAAGTACTCCACTTTTCCCCACAGATCTGATGGAGATTATGGAGCAGCGAAGGTGATGCTTAGACCTGCTTCTCCCGGTACTGGAGTTATTGCAGGTGGGGCTGTGAGAATTGTTCTTGAAATGGCGGGAGTTGAGAATGCTTTGGGAAAGCAACTAGGGAGTAATAATGCACTCAACAATGCCAGAGCAACCGTTATTGCTGTGCAGAAAATGAAGCAGTTTCGAGAGGTTGCTGAGGAGCGTGGTATTCCCATGGAAGAATTATGGAAGTAA 906 0.5695 MAAPSLSSALNSLSLSTSSRFSLLPSPPHTVSLLFAKPQHHPSLLCAKCKPSDDIDTSFFDNVNPLEDIDFNPPEPPEGFVAPPSFDDGPLETEDEIAAAYEELYGPAFSGVSVLGNDVFETDALVKQDTGFGSGTKKEKVRDGFEERVVQVRRVTKVVKGGKQLRFRAVVIVGDKKGQVGVGVGKAKEVVAAVQKSASNARRNIVKVPMTKYSTFPHRSDGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVIAVQKMKQFREVAEERGIPMEELWK 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03215 301 ProSiteProfiles S5 double stranded RNA-binding domain profile. 145 208 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vian1g03215 301 FunFam 30S ribosomal protein S5 134 206 - -
Vian1g03215 301 PANTHER RIBOSOMAL S SUBUNIT 138 300 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vian1g03215 301 Pfam Ribosomal protein S5, N-terminal domain 145 209 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vian1g03215 301 SUPERFAMILY Ribosomal protein S5 domain 2-like 215 293 IPR020568 -
Vian1g03215 301 Gene3D - 131 207 - -
Vian1g03215 301 NCBIfam 30S ribosomal protein S5 144 298 IPR005712 GO:0003735|GO:0006412|GO:0015935
Vian1g03215 301 FunFam 30S ribosomal protein S5 210 301 - -
Vian1g03215 301 ProSitePatterns Ribosomal protein S5 signature. 162 194 IPR018192 -
Vian1g03215 301 SUPERFAMILY dsRNA-binding domain-like 141 210 - -
Vian1g03215 301 Gene3D - 211 300 IPR014721 -
Vian1g03215 301 Hamap 30S ribosomal protein S5 [rpsE]. 125 298 IPR005712 GO:0003735|GO:0006412|GO:0015935
Vian1g03215 301 Pfam Ribosomal protein S5, C-terminal domain 222 292 IPR005324 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03215 Vian-Chr1 53574961 53576488 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03215 145 285 Cytoplasmic Ribosomal Protein Gene Family AT2G41840 31.544 1.32e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03215 K02988 - gmx:100820232 414.075