Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03213 ATGAAGTGCAAGGTGTGGCTGTGTTTGGTGGTCTTGGCCATGGCATTGGCCGTGGTGGCTGAAGCTTCCAAAGTTCATGAATTTGGCTTCCCTGGAGTTGGTATGGATCTCGTTGGAGACGACAATGAGATGCTGCTAGATTCTGAGTCAAACCGTCGCACACTGAATTCACGAGCACAATACATTAGCTATGGTGCTCTCAATGCCAACCAGATCCCATGTGGTAACCGCGGAGCCTCCTACTACAATTGCCAGGACAGGACTCGTGCCAACCCTTACACTCGTGGGAAACTCGTACGTTACACGCTTGAAGTGTTCAAGGGGACATTCGATGATGGAACTGTGTTTTCCATCAAGCGTGCGAAGCTTGGAAGCACCAAAGGCATTGATCAGATGCGAAACGAGGTTCGAATTCTGTGCCAAGTAAACCACAGAAGCTTGGTGAAACTCCTTGGTTGTTGCTTGGAACTTGAACACCCTTTGCTAATATACGAGTACGTTCCAAATGGGACCCTTTTTGATTACCTTCGTCGCCATTCTTGTGGCACAAGGGAACCCTTGAAATTGCACCAAAGACTAAAAATTGCACACCAAACAGCTGAAGGGCTTTCATATCAACATCAAAGCTTTGCAGAAGTTGTGACCACAAGGTGTAGTAATGGGGTACTGCATCACCTTGCAGCATATTCTGACGCACCTATGCTCGCAAGAGCCTTTGCCACCAAAGCCAATGCGCCTCCATGCAACACCTTGAAGGACTTCACCATTTACGGCAGCGGAGCATTTCACCTAGACAAGGTCGTTGCCGGTGTCGACCAACAGGAGGAGGCGCCGCGGCAGAGACGGGGAGGCAAGCGAAGAGCAGGCGCTCGAGGGCAACGGCAATGGAAGGGTTTTCGAGTAGGAGCCACTTGA 915 0.5027 MKCKVWLCLVVLAMALAVVAEASKVHEFGFPGVGMDLVGDDNEMLLDSESNRRTLNSRAQYISYGALNANQIPCGNRGASYYNCQDRTRANPYTRGKLVRYTLEVFKGTFDDGTVFSIKRAKLGSTKGIDQMRNEVRILCQVNHRSLVKLLGCCLELEHPLLIYEYVPNGTLFDYLRRHSCGTREPLKLHQRLKIAHQTAEGLSYQHQSFAEVVTTRCSNGVLHHLAAYSDAPMLARAFATKANAPPCNTLKDFTIYGSGAFHLDKVVAGVDQQEEAPRQRRGGKRRAGARGQRQWKGFRVGAT 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03213 304 ProSiteProfiles Protein kinase domain profile. 66 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03213 304 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 104 214 IPR045274 GO:0007166
Vian1g03213 304 MobiDBLite consensus disorder prediction 272 304 - -
Vian1g03213 304 SUPERFAMILY Protein kinase-like (PK-like) 104 211 IPR011009 -
Vian1g03213 304 Pfam Protein tyrosine and serine/threonine kinase 112 208 IPR001245 GO:0004672|GO:0006468
Vian1g03213 304 Pfam Rapid ALkalinization Factor (RALF) 43 96 IPR008801 -
Vian1g03213 304 Gene3D Transferase(Phosphotransferase) domain 1 101 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03213 Vian-Chr1 53555636 53560223 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03213 104 209 Receptor kinase-like Gene Family AT5G02070 65.094 7.39e-41 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vian1g03213 PK_Tyr_Ser-Thr 7.3e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03213 - - vum:124826816 292.352