Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03206 ATGAGAGAGTTTGATGAAGATGATCGCTTGGGGTTCAGTATTGAAGGTGGTAATGCTGAAGGTGCAGGAAGAGTTTCATGGTATGTGTTTCAGCTCTATGAGTGGTTGATCCATTGCATCCTTATGGAGAACAACCCTAGTTCATCAACAAGTGATAGAAAATTGGTTGAGAGGAATAGAAGAAATCAAATGAAGGATCTTTTCTCCAAGCTCAACTCAGTTCTGCCTCATCAAAGTTCAAGGGAAGGAATTTCGCGTCCAGATCAGATAGGTGAAGCCATAGACTACATAAAGAACTTACAGATTAAGTTGGAGAAGATGAAGGAGAAAAAAAGCAACTTAACTGACATTGTAAGGTCAAGAACTGCTAGCATGAATATGGAACTGAAATCTCCACAATTTAAGATCCAACAAATGGGTTCAGTCTTGGAGGTTGTTCTAGTAACTGGGTTGGATTTTCATTTCATTTTCAATGAGACCATTCGTGTTCTTCAAGAAGAAGGATCTGATATAGTTAATGCCAGTTATACTGTTGTAGAAGAATCTGTCAATGGAGCTTCGAGGATATCGGAGAAACTGAAGAATTTATGTCAATGGTCGGTAGCATGA 609 0.3892 MREFDEDDRLGFSIEGGNAEGAGRVSWYVFQLYEWLIHCILMENNPSSSTSDRKLVERNRRNQMKDLFSKLNSVLPHQSSREGISRPDQIGEAIDYIKNLQIKLEKMKEKKSNLTDIVRSRTASMNMELKSPQFKIQQMGSVLEVVLVTGLDFHFIFNETIRVLQEEGSDIVNASYTVVEESVNGASRISEKLKNLCQWSVA 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03206 202 FunFam Transcription factor bHLH162 42 126 - -
Vian1g03206 202 Pfam Helix-loop-helix DNA-binding domain 53 101 IPR011598 GO:0046983
Vian1g03206 202 Coils Coil 90 117 - -
Vian1g03206 202 Gene3D - 42 131 IPR036638 GO:0046983
Vian1g03206 202 SMART finulus 54 106 IPR011598 GO:0046983
Vian1g03206 202 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 48 180 - -
Vian1g03206 202 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 100 IPR011598 GO:0046983
Vian1g03206 202 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 52 114 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03206 Vian-Chr1 53435357 53440445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03206 44 183 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 41.935 3.12e-34 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian1g03206 HLH 8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03206 - - gmx:100810793 234.958