Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03197 ATGCATAGTCAACAAACAGAGAAAGAGGAAGACGATGAAGGTCCCCCACCGGGGTGGCAACCAATCACAAATCATCCGCCGCCACCGCAACAGCAACCGCCGCCGCAACCCCAACCACAACCGCAACCACCACCGCCTAGTCCATGTGGTTGGGGTCAGATGGTCTGCGGTTCTTGTCACCGCCTGCTTTCTTATCCACGAGGTGCCAAACATGTTAAATGTTCATGCTGTGAGGCTGTCAACATTGTATTAGAAGCTGATCAGGTTGGGCAAGTTGAGTGTGGCAGTTGTGCGGTATTGCTAATGTACCCATTTGGTGCTTCACATGTTAGGTGTTCCTCATGCCAATTTGTGACAGAAATTGGGGCACACAACGAGCGGCCTCCATGGTCTATACAACAAAGGAAACCAGTTCCTGCAAAATCTGGTTGTTAG 435 0.508 MHSQQTEKEEDDEGPPPGWQPITNHPPPPQQQPPPQPQPQPQPPPPSPCGWGQMVCGSCHRLLSYPRGAKHVKCSCCEAVNIVLEADQVGQVECGSCAVLLMYPFGASHVRCSSCQFVTEIGAHNERPPWSIQQRKPVPAKSGC 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03197 144 Pfam LSD1 zinc finger 94 118 IPR005735 -
Vian1g03197 144 Pfam LSD1 zinc finger 56 80 IPR005735 -
Vian1g03197 144 MobiDBLite consensus disorder prediction 1 15 - -
Vian1g03197 144 MobiDBLite consensus disorder prediction 19 48 - -
Vian1g03197 144 NCBIfam zinc finger domain, LSD1 subclass 91 119 IPR005735 -
Vian1g03197 144 NCBIfam zinc finger domain, LSD1 subclass 53 83 IPR005735 -
Vian1g03197 144 PANTHER PROTEIN LSD1 7 142 IPR040319 -
Vian1g03197 144 MobiDBLite consensus disorder prediction 1 48 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Vian1g03197 zf-LSD1 2.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03197 - - gmx:100780865 221.861