Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03193 ATGTTCGGTTCATCGTCTTCCGCTCCGTTCAAGATGAGAGTCACCAACACGCCCTCCAGCGACCTCGTTCTCACCAACCTCGCCTACTGTTCCCCCTCCGATCTTCGCAACTTCGCTGTCCCCGGTCACAAAAACCTCTACCTCGCCACCGTCGCCGATTCCTTCGTCCTGTCTCTCTCTGCTCATGACAACATAGGCAGCGACCAGATTGGGTTGAACTCCATTCAACGGCGGTGTGCCAAAGTTTCTAGTGGTGATTCCGTACAATTGACCCGATTTGTGCCTCCCGACGACTTCAACCTCGCACTGCTTACCATTGATTTGGAATTTGTTAAAAAGGGGAATAAGAGTGAGCAGATTGATGCTGTTCTACTGGCTAAGCAACTCCGGAAGAGATTTTCAAACCAGGTTATGACTGTGGGGCAAAAAGTGTTATTTGAGTACCATGGAAATAACTATAGCTTTACTGTCAGTCAAGCTACTGTTGAAGGCCAACAAAAGTCCAATTCTCTTGAAAGAGGGATGATTTCTGATGACACGTACATTGTTTTTGAAACATCACGTGATAGTGGAATTAAGATTGTCAACCAACGGGAGGGGGCAACTAGCAACATTTTCAAGCAGAAAGAATTTAACCTTCAGTCACTGGGTATTGGTGGCTTGAGTGCAGAATTTGCAGATATATTTCGAAGAGCTTTTGCCTCTCGTGTTTTCCCTCCCCATGTGACATCTAAATTAGGAATCAAGCATGTGAAGGGCATGCTTCTTTATGGGCCTCCTGGAACTGGAAAGACACTTATGGCACGTCAAATTGGAAAAATTTTGAATGGGAAGGAACCAAAGATTGTAAATGGTCCTGAAGTTTTGAGCAAATTTGTTGGGGAAACTGAAAAGAATGTGAGAGACCTTTTTGCTGACGCCGAACAGGATCAGAGGACCCGAGGGGATGAAAGTGATTTGCATGTTATAATCTTTGATGAAATTGATGCTATTTGCAAGTCAAGGGGTTCAACTCGGGATGGTACTGGAGTTCATGACAGCATAGTAAATCAGCTTCTGACTAAGATAGATGGTGTGGAGTCACTCAATAATGTTTTGCTTATTGGAATGACTAACAGAAAGGATATGCTTGATGAAGCTCTCTTAAGACCAGGGAGATTGGAAGTCCAGGTTGAGATAAGCCTTCCTGATGAAAATGGTCGACTACAAATTCTTCAAATTCACACCAACAAAATGAAAGAGAATTCTTTTCTAGCTCCTGATGTGAACCTTCAAGAGCTTGCTGCTCGAACAAAAAACTACAGTGGTGCAGAACTTGAAGGTGTTGTGAAAAGTGCCGTGTCATATGCTTTAAATAGACAATTAAGTCTAGATGATCTCACTAAGCAAGTGGAGGAAGAGAACATTAAGGTTACAATGGAAGACTTTTTGAATGCACTCCAAGAAGTTATTCCGGCATTTGGTGCTTCAACTGATGATCTTGAAAGATGCAGACTACATGGCATGGTGGAGTGTGGTGATCGTCATAAACACATTTACCAAAGAGCAATGCTACTTGTGGAGCAAGTTAAAGTGAGCAAAGGAAGCCCACTTGTCACTTGTCTCCTGGAAGGATCCCGTGGCAGTGGTAAAACTGCACTAGCAGCTACTGTTGGTATTGACAGTGATTTCCCGTATGTCAAGATAGTTTCAGCTGAAACAATGATTGGTCTACATGAGAGCACCAAATGTGCACAGATTATCAAGGTTTTTGAGGATGCATACAGGTCACCCTTGAGTGTCATAGTTCTTGATGACATTGAGAGATTATTAGAGTATGTAGCAATTGGTCCTCGTTTTTCAAACTTGATTTCTCAGACGCTACTGGTTTTGCTCAAACGGCTTCCTCCAAAGGGGAAAAAACTCATGGTTGTTGGCACAACAAGTGAACTGGGTTTCTTGGACTCAATTGGATTTTGTGATACCTTCTCCGTTACATACCACGTTCCTACCTTGAACACAAAGGATGCAAAGAAGGTCCTTGAACAGTTGAGTGTATTCTCTGAGGACGATATTGATTCTGCTGCAGAGGCATTGAATGATATGCCTATCAGGAAGCTATACATGTTGATTGAAATGGCAGCGCAAGGGGAGCAAGGTGGATCTGCGGAGGCCATCTATTCTGGCAAAGAGAAGATTAATATCTCTCATTTCTATGATTGCCTCCAGGATGTTGTTAGATTATAA 2226 0.4308 MFGSSSSAPFKMRVTNTPSSDLVLTNLAYCSPSDLRNFAVPGHKNLYLATVADSFVLSLSAHDNIGSDQIGLNSIQRRCAKVSSGDSVQLTRFVPPDDFNLALLTIDLEFVKKGNKSEQIDAVLLAKQLRKRFSNQVMTVGQKVLFEYHGNNYSFTVSQATVEGQQKSNSLERGMISDDTYIVFETSRDSGIKIVNQREGATSNIFKQKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKILNGKEPKIVNGPEVLSKFVGETEKNVRDLFADAEQDQRTRGDESDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVVKSAVSYALNRQLSLDDLTKQVEEENIKVTMEDFLNALQEVIPAFGASTDDLERCRLHGMVECGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGSRGSGKTALAATVGIDSDFPYVKIVSAETMIGLHESTKCAQIIKVFEDAYRSPLSVIVLDDIERLLEYVAIGPRFSNLISQTLLVLLKRLPPKGKKLMVVGTTSELGFLDSIGFCDTFSVTYHVPTLNTKDAKKVLEQLSVFSEDDIDSAAEALNDMPIRKLYMLIEMAAQGEQGGSAEAIYSGKEKINISHFYDCLQDVVRL 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03193 741 Gene3D - 492 663 IPR027417 -
Vian1g03193 741 Pfam Cell division protein 48 (CDC48), domain 2 119 182 IPR004201 -
Vian1g03193 741 CDD RecA-like_NSF-SEC18_r1-like 217 393 - -
Vian1g03193 741 Gene3D - 97 194 - -
Vian1g03193 741 PANTHER VESICULAR-FUSION PROTEIN NSF 10 740 IPR039812 GO:0016887|GO:0035494
Vian1g03193 741 ProSitePatterns AAA-protein family signature. 365 383 IPR003960 GO:0005524|GO:0016887
Vian1g03193 741 Gene3D - 10 93 - -
Vian1g03193 741 Gene3D - 204 395 IPR027417 -
Vian1g03193 741 FunFam Vesicle-fusing ATPase 396 483 - -
Vian1g03193 741 FunFam Vesicular-fusion ATPase SEC18 206 396 - -
Vian1g03193 741 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 495 710 IPR027417 -
Vian1g03193 741 SMART CDC48_N_2 11 96 IPR003338 -
Vian1g03193 741 FunFam vesicle-fusing ATPase isoform X1 492 663 - -
Vian1g03193 741 Gene3D - 396 483 - -
Vian1g03193 741 FunFam Vesicle-fusing ATPase protein 10 93 - -
Vian1g03193 741 Pfam ATPase family associated with various cellular activities (AAA) 254 394 IPR003959 GO:0005524|GO:0016887
Vian1g03193 741 Pfam ATPase family associated with various cellular activities (AAA) 535 648 IPR003959 GO:0005524|GO:0016887
Vian1g03193 741 Pfam AAA+ lid domain 421 476 IPR041569 -
Vian1g03193 741 SUPERFAMILY ADC-like 9 93 IPR009010 -
Vian1g03193 741 SMART AAA_5 530 668 IPR003593 GO:0016887
Vian1g03193 741 SMART AAA_5 250 397 IPR003593 GO:0016887
Vian1g03193 741 SUPERFAMILY Cdc48 domain 2-like 96 199 IPR029067 -
Vian1g03193 741 FunFam Vesicle-fusing ATPase 97 194 - -
Vian1g03193 741 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 229 493 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03193 Vian-Chr1 53236785 53249539 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03193 245 461 Calmodulin-binding Proteins AT3G56690 38.914 2.76e-40 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03193 K06027 - gmx:100791847 1342.02