Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03192 ATGGTTGATAACAGTGTGTTAGAGCTGAACCTTGGTTTAGGTAACAACAACAACAATAACAACGTTGTTGGTGGTCATGCACATGCAGGACAGTCACCGAGGCAAAGGTGTCCGGCACCATTTCTGTTGAAGACGTACGATCTGTTGGAAGAAGGTGAGAGTGAAGATATGACAAGAATAGTGTCGTGGAATGAAGAAGGAAGTGCCTTTGTTGTGTGGTCTCCTGCAGAATTCTCTGAGCACACCTTGCCTAGATATTTCAAGCACAACAACTTCTCTAGCTTCATTCGCCAATTGAACACTTATGGATTTAAGAAAATGTCATCGAAAAGATGGGAATTCAAACACGAGAAATTTCAGAGGGGTTGCAGGCACATGCTAGGTGAAATCACAAGGAAAAAGTGCGAGCCAAGTGTTTTTCCTGCATACCTTAAGTCTTCTTCTGAGGAAAATGCAACGAGTTCCACAGAAGAAAACAATCAGCAACTTCTTATGGAGGAGAACAAGAACCTTAAGAAGGAGAGATTAGAGCTTCAAATGCAGATTGATGAATGCAAAGCACTTGAAATGAAGTTGCTCGCATGCCTCTCTCAGTTTATGGACACCCAACAAACTAAAATTAGGAGACTTTGTTAA 636 0.4167 MVDNSVLELNLGLGNNNNNNNVVGGHAHAGQSPRQRCPAPFLLKTYDLLEEGESEDMTRIVSWNEEGSAFVVWSPAEFSEHTLPRYFKHNNFSSFIRQLNTYGFKKMSSKRWEFKHEKFQRGCRHMLGEITRKKCEPSVFPAYLKSSSEENATSSTEENNQQLLMEENKNLKKERLELQMQIDECKALEMKLLACLSQFMDTQQTKIRRLC 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03192 211 Gene3D - 33 134 IPR036388 -
Vian1g03192 211 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 34 185 IPR027725 -
Vian1g03192 211 Pfam HSF-type DNA-binding 41 133 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian1g03192 211 SUPERFAMILY "Winged helix" DNA-binding domain 38 133 IPR036390 -
Vian1g03192 211 ProSitePatterns HSF-type DNA-binding domain signature. 83 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian1g03192 211 Coils Coil 154 191 - -
Vian1g03192 211 FunFam Heat stress transcription factor A-6b 34 134 - -
Vian1g03192 211 PRINTS Heat shock factor (HSF) domain signature 41 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian1g03192 211 PRINTS Heat shock factor (HSF) domain signature 95 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian1g03192 211 PRINTS Heat shock factor (HSF) domain signature 82 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian1g03192 211 SMART hsfneu3 37 133 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03192 Vian-Chr1 53223806 53225599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03192 29 205 HSF AT5G62020 35.885 3.96e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vian1g03192 HSF_DNA-bind 7.9e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03192 K09419 - gmx:100789792 310.842