Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03187 ATGGAAATAGAGAGGTACACCAGTCCGCGGTGGCGTCCTACTGACGATCAGATCAAGATGATGACCAACATCTATAATTACGGGGTCACACATCCCAGCAGAGCCCAAGTCGTCGAGATTGCATCTCGACTAAGGGCTTTCGGAGAAGCCAGTGAATATAACGTGCACTGCTGGTTCAACAACCATGGCAATCGGGTCCGGCGCTGGCAAGCGGAGATAGACCCCACTGGCACTCACTTTTCACAACTGCCGCTATATATGTATGAATACGACTGGGTGATCATGAGGGCGCCGAGGCTGCTGGACTTGTTCCCCGTTCCGATCATCATTGACGACGACAGGGACGGACGACAAATCGCTCCACCCATGCTTCTCACATTCCGGACCAGAGCTCCCTCGACGGAGCTCTCCCTCAGACCACCGCAACCAGCTCGGGAATTTTTTCGCTGA 450 0.54 MEIERYTSPRWRPTDDQIKMMTNIYNYGVTHPSRAQVVEIASRLRAFGEASEYNVHCWFNNHGNRVRRWQAEIDPTGTHFSQLPLYMYEYDWVIMRAPRLLDLFPVPIIIDDDRDGRQIAPPMLLTFRTRAPSTELSLRPPQPAREFFR 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03187 149 CDD homeodomain 9 70 IPR001356 GO:0003677
Vian1g03187 149 Pfam Homeodomain 8 68 IPR001356 GO:0003677
Vian1g03187 149 SUPERFAMILY Homeodomain-like 9 70 IPR009057 -
Vian1g03187 149 Gene3D - 8 73 - -
Vian1g03187 149 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 5 68 IPR044555 GO:0003700|GO:0099402
Vian1g03187 149 ProSiteProfiles 'Homeobox' domain profile. 4 69 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03187 Vian-Chr1 53179786 53180333 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03187 7 72 Wox Gene Family AT5G59340 43.939 1.12e-13 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vian1g03187 Homeodomain 1.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03187 - K01830 vum:124821070 279.256