Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vian1g03186 | ATGTACGTAGCTTCCATGCGTAAGTCTTTCAAGGACTCCTTGAAAGTCCTTGAAGCTGACATCCAGCACGCCAACACCCTGGCGTCAGATTTTCCAAGGGAATATGATGGTGCGTGCCTTCAGATGAGAATGTCATACAGTCCGGCAGCGCACTTGTTTCTTTTTCTGGTGCAATGGACAGATTGTCATCTTGCTGGAGCCCTTGGACTGTTAAGAATCCTAATTTACAAGGTCTATGTGGATGGGACAACCACCATGTCTACACATGAAAGAAAAGCAAGTATTAGAGAATTCTATGCGGTCATTTATCCCTCTTTATTGCAACTTCAGAAAGGTATCACTGACACTGAGGATAAGAAGCAAAAGGCTGTATGCATGGAGAGGTATCGCAGAAGAGATGATGAGGATTATAGACAGTCTTCGGACATAGACATTGAAAGAGAAGATGAATGTGGAATATGCATGGACATGAATACTAAGATTGTGTTACCCAACTGCAACCATGCCATGTGCCTGAAATGTTACCGAGAATGGCGAACTATATCACAATCATGCCCATTTTGCCGTGACAGTCTGAAGAGAGTGAACTCAGGTGATCTGTGGGTATTCACTGATAGGAGGGATGTGGTAGACATGGCAACAGTGACAAGGGAGAATCTGAGAAGGCTTTTCATGTACATAGATAAGTTGCCTTTGATTGTTCCAGACTCCCTTTTTGATGCTTATGACTCTCACATACGGTAA | 744 | 0.4341 | MYVASMRKSFKDSLKVLEADIQHANTLASDFPREYDGACLQMRMSYSPAAHLFLFLVQWTDCHLAGALGLLRILIYKVYVDGTTTMSTHERKASIREFYAVIYPSLLQLQKGITDTEDKKQKAVCMERYRRRDDEDYRQSSDIDIEREDECGICMDMNTKIVLPNCNHAMCLKCYREWRTISQSCPFCRDSLKRVNSGDLWVFTDRRDVVDMATVTRENLRRLFMYIDKLPLIVPDSLFDAYDSHIR | 247 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vian1g03186 | 247 | SUPERFAMILY | RING/U-box | 140 | 194 | - | - | |
| Vian1g03186 | 247 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 127 | 197 | IPR013083 | - | |
| Vian1g03186 | 247 | ProSitePatterns | Zinc finger RING-type signature. | 166 | 175 | IPR017907 | - | |
| Vian1g03186 | 247 | PANTHER | RING FINGER PROTEIN 41, 151 | 8 | 245 | - | - | |
| Vian1g03186 | 247 | FunFam | RING/U-box superfamily protein | 129 | 198 | - | - | |
| Vian1g03186 | 247 | Pfam | Zinc finger, C3HC4 type (RING finger) | 148 | 194 | - | - | |
| Vian1g03186 | 247 | ProSiteProfiles | Zinc finger RING-type profile. | 151 | 189 | IPR001841 | - | |
| Vian1g03186 | 247 | SMART | ring_2 | 151 | 188 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vian1g03186 | Vian-Chr1 | 53164976 | 53168182 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vian1g03186 | K25840 | - | gmx:100777318 | 486.493 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vian1g03186 | 1 | 53164976 | 53168182 | Vian6g01791 | 6 | 35398561 | 35404172 | PCT |