Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03182 ATGAGTTGTGGCTGCTTTGGAGCCTCAACTCTCAAGAAGAAAAGCAATCCTTCTCGTACTCCTAATGAGATTGATGGCTTTCCACTTGATAATGTTAAGAATTTTTCTGATAAAGACCTGAGACTGGCCACTGATAACTATCATCCAAGCAAAAAGCTAGGACGAGGAGGTTTTGGAACTGTTTACCAGGGAACCTTAAAAAATGGAAGACAAGTAGCAGTGAAGACACTTTCTGCTGGGTCAAAGCAGGGAGTTCGTGAATTTTTATCTGAAATTAAAACTATATCAAATGTTAAACATCCAAACCTTGTTGAATTGGTTGGTTGCTGCGTTCAAGAAACTAATCGCATATTAGTGTATGAATATGTGGAAAATAACAGCCTTGATCGTGCATTAATTGGTGGAGGTTCAAATATCAGATTAGACTGGAGAAAAAGATCTGATATTTGCATGGGTACTGCTAGAGGTCTTGCGTTTCTTCATGAAGAACTTGTGCCACACATTGTGCATAGAGACATCAAGGCAAGCAATATACTACTTGACAAACATTTCAAGCCAAAAATAGGAGATTTCGGGTTGGCTAAATTATTTCCAGATGACATCACTCACATTAGCACAAGGATTGCTGGAACAACTGGTTACTTAGCACCAGAATATGCAATGGGTGGCCAGTTAACCCTGAAGGCTGATGTATATAGTTTTGGTGTTCTTATTCTTGAAATAATCAGTGGCAAAAGCAGTGCAAGGACAAACTGGGGAGGGTCCAACAAATTCCTCTTGGAATGGGCCTGGCAACTGTATGAAAATGGGAAACTATTGGAACTTGTGGATCCAGACATGGTTGAATTCCCTGAGGAAGAGGTAATTAGGTACATGAAGGTTGCTTTTTTCTGCACACAAGCTGCAGCAAGTAGAAGGCCAATGATGTCCCAAGTTCTGAATATGCTGTCCAAGAACACGAGGCTGAATGAAAAGGAACTAACTGCACCAGGGTTTTTCCAGGATTCAGGAACATCTTCTCAGAAGAAGTCATCCTTTGAATCCACCAGCTATCAATTTAGCTCTAACCCTTCCAGTATTACTCAGTTGGCCCCACGTTGA 1101 0.4087 MSCGCFGASTLKKKSNPSRTPNEIDGFPLDNVKNFSDKDLRLATDNYHPSKKLGRGGFGTVYQGTLKNGRQVAVKTLSAGSKQGVREFLSEIKTISNVKHPNLVELVGCCVQETNRILVYEYVENNSLDRALIGGGSNIRLDWRKRSDICMGTARGLAFLHEELVPHIVHRDIKASNILLDKHFKPKIGDFGLAKLFPDDITHISTRIAGTTGYLAPEYAMGGQLTLKADVYSFGVLILEIISGKSSARTNWGGSNKFLLEWAWQLYENGKLLELVDPDMVEFPEEEVIRYMKVAFFCTQAAASRRPMMSQVLNMLSKNTRLNEKELTAPGFFQDSGTSSQKKSSFESTSYQFSSNPSSITQLAPR 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03182 366 FunFam cold-responsive protein kinase 1 18 122 - -
Vian1g03182 366 FunFam Putative LRR receptor-like serine/threonine-protein kinase 123 328 - -
Vian1g03182 366 SMART serkin_6 47 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03182 366 MobiDBLite consensus disorder prediction 332 366 - -
Vian1g03182 366 Gene3D Phosphorylase Kinase; domain 1 19 122 - -
Vian1g03182 366 ProSiteProfiles Protein kinase domain profile. 47 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03182 366 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 31 350 - -
Vian1g03182 366 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Vian1g03182 366 CDD STKc_IRAK 53 318 - -
Vian1g03182 366 MobiDBLite consensus disorder prediction 330 366 - -
Vian1g03182 366 Pfam Protein tyrosine and serine/threonine kinase 50 316 IPR001245 GO:0004672|GO:0006468
Vian1g03182 366 SUPERFAMILY Protein kinase-like (PK-like) 31 349 IPR011009 -
Vian1g03182 366 Gene3D Transferase(Phosphotransferase) domain 1 123 333 - -
Vian1g03182 366 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03182 Vian-Chr1 53064740 53068811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03182 35 356 Receptor kinase-like Gene Family AT1G56120 50.769 1.28e-107 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vian1g03182 PK_Tyr_Ser-Thr 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03182 - - gmx:100788143 677.937