Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03171 ATGGGTTTGAGTTCTAAGCAGGTTTCTAGCAGTGGACTTGATTGGAAACAAACCTTATTGGAGGCTCAGGACTTGGAACTCCCAAAGCCTAATCTGATGAGGAAACAACAGCAGCAGCAGCAGCAGCAGCAAACTCAGCCTTCAGAGTCTTTGAAGTGCCCGAGATGTGACTCAACCAACACCAAGTTTTGTTACTACAACAATTACAACAAGTCTCAGCCTCGCCATTTCTGCAGGGCTTGCAAGAGGCACTGGACTAAAGGTGGAACTCTACGAAATGTTCCGGTGGGTGGTGGAAGGAAGAACAAGAGGGTCAAAAAACCAAACACTCCAACACCTTCTTCCACCACTGCCACTACCACCCCGACAACAGCCAGCCCTTCTACTTGCACTGCCACCGTCACAACCTCAATTGGCAACATGGATGCTTTGCTGGGTAGTAGCCACATGACAATTCAAACTCCTCTTGCAGATGATCAGAAACACATGGCTTCCTCTCTCTACCAAGCTCTAATTCGTCCACCACCTTTGCTGCTACAACAGAATCTGATGAACGCGAGAGACTTAGACGGCAAAGATTTTGGTATTGGTATTGGTATTGGTATTGGTAATAATGGTATCTTCCCGAGTTCAACTTTGCCTCTTCCTCATCAAAGCCAAAGCCTACTCTTCCCTTTCTCAACCTCAAGCAGCTCTTTTGACACCAACCCTTGTTCGGTGTCAACTTCTCTGAGATCATCCAATGTTTATAACTATGGGGAGGAGTTCAAAGCAGCGGAAGAATCAACCATCAACAGTACTTCTATAGCGCCTAGCACAGGTGGCACTAACACACAGCCATGGGAGATAGCAGCAACAAGTGGTGTTGGCTTGGGAACTTCAAACTTTTGGAATTGGGAGGACTTTGATTCATTGGTCTCAACTGATCTAAAAGATCCCTGGGATGATTCTGACATCAAACCCTGA 966 0.4648 MGLSSKQVSSSGLDWKQTLLEAQDLELPKPNLMRKQQQQQQQQQTQPSESLKCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRVKKPNTPTPSSTTATTTPTTASPSTCTATVTTSIGNMDALLGSSHMTIQTPLADDQKHMASSLYQALIRPPPLLLQQNLMNARDLDGKDFGIGIGIGIGNNGIFPSSTLPLPHQSQSLLFPFSTSSSSFDTNPCSVSTSLRSSNVYNYGEEFKAAEESTINSTSIAPSTGGTNTQPWEIAATSGVGLGTSNFWNWEDFDSLVSTDLKDPWDDSDIKP 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03171 321 ProSitePatterns Zinc finger Dof-type signature. 53 89 IPR003851 GO:0003677|GO:0006355
Vian1g03171 321 MobiDBLite consensus disorder prediction 26 53 - -
Vian1g03171 321 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 35 217 IPR045174 GO:0003700|GO:0006355
Vian1g03171 321 MobiDBLite consensus disorder prediction 32 53 - -
Vian1g03171 321 MobiDBLite consensus disorder prediction 89 128 - -
Vian1g03171 321 ProSiteProfiles Zinc finger Dof-type profile. 51 105 IPR003851 GO:0003677|GO:0006355
Vian1g03171 321 MobiDBLite consensus disorder prediction 108 128 - -
Vian1g03171 321 Pfam Dof domain, zinc finger 50 103 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03171 Vian-Chr1 52925949 52926914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03171 51 108 C2C2-Dof Transcription Factor Family AT1G28310 84.746 3.35e-31 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vian1g03171 zf-Dof 1.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03171 - - gmx:100818111 454.907