Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03167 ATGCATGACACAGATACAATTGATCGTAATCATATCAGTATCATGGACAGCACCGATTCATCTTCAGGCTCTCAGCACCCACACCTCCCTCCTGGCTTTCGCTTCCACCCCACCGACGAAGAACTCGTCGTTCACTACCTCAAGAGAAAAGCTTCTTCTACACCCCTTCCCGTCGCCATCATCGCCGACGTTGATCTCTACAAGTTCGACCCTTGGGAGCTCCCAACTGCTATTACAAATGCAAAACTGTCTGTCATCAGACCTTATGAATCGGATTTAGGTTGTTTTTTAATGATGCTTGTTCATGATTCCTTTAATTCAACCTCAAAACCCCCTCCTCTTGTTCCTCCAAACAAGAAAAATTCCCTCAGGCTTGATGACTGGGTGTTGTGTCGAATATACAAGAAAAGCAACAGCAGCACCGTAACAAGGCCACCCTTGATGGAGCATGGAGAGGAGCTTTCAATGGAGAACATGCTTCCAACGATGTCAACTTTGTCAATGGCTAATAACAATACTCAAAACTCTAAACCTCCATCTTCGAGGAGTACGAGTTATGGAGCACTGGGACTTGAAAATGATGACAACTTCTTCGATGGAATCTTAGCCGTTGATCATCAGAGCATGCAAAGTGGTTCTGATTCTCACCTTTTCTCTCCAAACTCAAAGGGTACCAACTTTCCTATGAAACGTGCTCTCACATCACAACAACTTTGGAACGAGACAGGGTCTCCGGGGTCATCTTCTTCATGTAAGCGATTCCATGGTGATCTTAACAGTGGAAGCAGCAACGCTGAGGACAATGATTCCTTTGTTTCCTTGCTTAGCCAGTTTCCTCAGAACGCAACTTTTCAACCAAACGCGATTCATGCCTCCGTTGGGAATGGTGTGCAGAGGCAACAACAGTTTCATCTTCCTGGTATAAATTGGAACTGA 936 0.4519 MHDTDTIDRNHISIMDSTDSSSGSQHPHLPPGFRFHPTDEELVVHYLKRKASSTPLPVAIIADVDLYKFDPWELPTAITNAKLSVIRPYESDLGCFLMMLVHDSFNSTSKPPPLVPPNKKNSLRLDDWVLCRIYKKSNSSTVTRPPLMEHGEELSMENMLPTMSTLSMANNNTQNSKPPSSRSTSYGALGLENDDNFFDGILAVDHQSMQSGSDSHLFSPNSKGTNFPMKRALTSQQLWNETGSPGSSSSCKRFHGDLNSGSSNAEDNDSFVSLLSQFPQNATFQPNAIHASVGNGVQRQQQFHLPGINWN 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03167 311 ProSiteProfiles NAC domain profile. 29 194 IPR003441 GO:0003677|GO:0006355
Vian1g03167 311 MobiDBLite consensus disorder prediction 13 27 - -
Vian1g03167 311 MobiDBLite consensus disorder prediction 239 266 - -
Vian1g03167 311 MobiDBLite consensus disorder prediction 1 32 - -
Vian1g03167 311 PANTHER NAC TRANSCRIPTION FACTOR 56 29 76 - -
Vian1g03167 311 SUPERFAMILY NAC domain 23 136 IPR036093 GO:0003677|GO:0006355
Vian1g03167 311 Gene3D NAC domain 38 92 IPR036093 GO:0003677|GO:0006355
Vian1g03167 311 MobiDBLite consensus disorder prediction 167 188 - -
Vian1g03167 311 Pfam No apical meristem (NAM) protein 30 77 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03167 Vian-Chr1 52819538 52821155 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03167 19 76 NAC Transcription Factor Family AT1G61110 82.759 1.66e-28 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian1g03167 NAM 1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03167 - - gmx:100797132 338.576