Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03165 ATGGATAACATTGTATTAAACCTCACTAGTTTATACACCTTGCTTCTTTTTCTTTTCCTATCTTATAAGCCTGCTCTTTCGTTTTCTTCTAGAAATAGCCAATATTGGGGTGGTGACAGGATTTTGAGCTCTGCTTATGATGATGATCTTGTCACTAACTTGCCTGGTCAACCCAAGGTGAATTTCCAGCACTATGCTGGATATGTCACAGTCAATGAAACCAATGGAAGAGCACTCTTTTACTGGTTCTATGAGGCTATGACCAACCCAGAAGAGAAACCGTTGGTGCTTTGGCTTAATGGAGGTCCTGGGTGCTCTTCTGTGGGATACGGAGCAACACAGGAGATTGGTCCATTTTTAGTGGACAGTGATGGCCATGGCCTCAAATTTAATAACTTCTCATGGAACAGAGAAGCCAGCATGTTATTCCTGGAATCTCCTGTTGGAGTTGGCTTTTCATACTCAAATACAAGCAGTGACTATGACCAATTGGGAGATGATTTAACAGCTAACGATGCTTACTCTTTTCTTCACAACTGGTTCCAAAAGTTTCCATCATACAGAACGAGAGCGTTTTACATAGCAGGGGAGAGCTATGCAGGAAAGTATGTACCGGAGCTGGCTGAACTCATCCATGATAGGAACAAGGACCCCTCTCTCTATATTGATCTCAAGGGCATTCTGTTGGGTAACCCAGAAACATCTGATGCTGAGGACTGGGTGGGCCTGGTTGATTATGCTTGGAGCCATGCTGTGATATCTGATGAAACTCATAAAATAATCAAAACAAGTTGTGACTTTAACAGCACTGATCCATGGCGTAACGAAGATTGTAGTGAAGCTGTGGATGAAGTACTCAAACAATACAACGAAATTGATATCTACAGTCTCTACACCTCTGTCTGCTTTGCCAGCACAGCACGTTCAGACGATCAATCCATGCAAACTTCCATGAAGCTTACATCTAAAATGATGCCTAGGATGTTGGGTGGCTATGATCCATGCCTTGATGACTATGCTAAAGCTTTTTATAATAAACCAGATGTTCAGAAGGCTCTTCATGCCAGTGATGGTCACAACCTAAAGAATTGGACCATTTGCAACAACAAGATATTCAATGAATGGGCAGATTCAAAGCCATCTGTTATCCCAATTTACAAGAAGCTTATTTCAGCAGGACTTAGGATTTGGGTTTACAGTGGAGACACAGATGGTAGAGTACCAGTGTTGTCCACAAGATACAGCTTAAGCTCTCTTTCCTTGTCTGTCACTAAATCATGGAGGCCTTGGTACCATGAAAATGAGGTTAGTGGATGGTTTGAAGAATACGAGGGTCTTACATTTGCAACGTTTCGAGGAGCTGGGCATGCAGTTCCCTGTTTTAAACCAAGCAATTCACTTGCGTTCTTCACTTCCTTTCTCAATGGAGAATCACCTCCTTCCACAAAATAA 1452 0.4222 MDNIVLNLTSLYTLLLFLFLSYKPALSFSSRNSQYWGGDRILSSAYDDDLVTNLPGQPKVNFQHYAGYVTVNETNGRALFYWFYEAMTNPEEKPLVLWLNGGPGCSSVGYGATQEIGPFLVDSDGHGLKFNNFSWNREASMLFLESPVGVGFSYSNTSSDYDQLGDDLTANDAYSFLHNWFQKFPSYRTRAFYIAGESYAGKYVPELAELIHDRNKDPSLYIDLKGILLGNPETSDAEDWVGLVDYAWSHAVISDETHKIIKTSCDFNSTDPWRNEDCSEAVDEVLKQYNEIDIYSLYTSVCFASTARSDDQSMQTSMKLTSKMMPRMLGGYDPCLDDYAKAFYNKPDVQKALHASDGHNLKNWTICNNKIFNEWADSKPSVIPIYKKLISAGLRIWVYSGDTDGRVPVLSTRYSLSSLSLSVTKSWRPWYHENEVSGWFEEYEGLTFATFRGAGHAVPCFKPSNSLAFFTSFLNGESPPSTK 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03165 483 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 51 463 IPR001563 GO:0004185|GO:0006508
Vian1g03165 483 Gene3D - 382 476 - -
Vian1g03165 483 PRINTS Carboxypeptidase C serine protease (S10) family signature 144 154 IPR001563 GO:0004185|GO:0006508
Vian1g03165 483 PRINTS Carboxypeptidase C serine protease (S10) family signature 180 205 IPR001563 GO:0004185|GO:0006508
Vian1g03165 483 PRINTS Carboxypeptidase C serine protease (S10) family signature 446 459 IPR001563 GO:0004185|GO:0006508
Vian1g03165 483 PRINTS Carboxypeptidase C serine protease (S10) family signature 131 143 IPR001563 GO:0004185|GO:0006508
Vian1g03165 483 FunFam Carboxypeptidase 382 476 - -
Vian1g03165 483 ProSitePatterns Serine carboxypeptidases, serine active site. 194 201 IPR018202 GO:0004185
Vian1g03165 483 FunFam Carboxypeptidase 45 304 - -
Vian1g03165 483 Pfam Serine carboxypeptidase 55 476 IPR001563 GO:0004185|GO:0006508
Vian1g03165 483 Gene3D - 335 371 - -
Vian1g03165 483 Gene3D alpha/beta hydrolase 45 304 IPR029058 -
Vian1g03165 483 SUPERFAMILY alpha/beta-Hydrolases 48 477 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03165 Vian-Chr1 52791010 52794314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03165 340 477 Calmodulin-binding Proteins AT2G22960 33.094 1.67e-16 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03165 K16297 - gmx:100815993 898.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03165 1 52791010 52794314 Vian6g01815 6 35573951 35577273 PCT