Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03163 ATGGCGGATGATGATGTTGACTTTTCGAAACTGTTCCATGGTGATGATGATGACGATGGCATGTTTTATATAGATATGAACACCGTTCAGAAGGTTCTTGATGAAGACGATAATTGTGATTTTCTGGAGAAATTTCCCGATGATTCTTCATCAAAAAATGTTTCACCCAGTGAATCTGGAACTCATGACTCATTTCAGATACAAAATGGGTCTCAAGTGTTAGAAGAACAACAGTTTTCTAGGTTGGGCTTTCTAGATTCAGTCACGAGTTGTTCTCCGTTCTGCTCAGATGGCTCGGATTTTGGTGTCAGAGGTTCAGTTGGTGTATCTGATTCTGTAGCAAATTCTTGGCTTGATATTGAACCTGAAAACGAGGGACCTCAATCCCAGGCATGCTCCTCCCCAAATGCATTTCCCGGTAATCTCAGTACCCTCTCCCCAGGTCAAAGTGATGAGGTTTTCTGCACAGAGAGGACCAGAGTCTCTAAACATGAGATACCTGCTTGCAGTGTGGAATCAAGTTTCCCTGAGGCACAGTCAAAAGATATATCAATTTGTAGAGATAATTTGAATCCAAGTCCGTGGAAAGGTGAAAATGAGATCCAATTCAAGCATTTCCGAGAGGATGTTGAATTTGAAAATACTTCAATCAGTTCTATAGTTGACAATGATGATATAAATATCGAAGGTTATGTTGAAGACACCACTGGAGGAGTTTCTGGGCCACAGGAAAATGATTCGTGTACATCTTTTGAAGCATTTATGGATGCTGATAGATTTTTGCATGTTGCAACTTCACCTGATTCTACTATTGGTCAAGGTTCTCATGGTTCCAGTGATTTCATTGACTACCATGGATCTTCAACTTATTACGAGGGAATGCATAGTGGACCCTTTGTTGCTGACTCTTCTCTTGGTATTTTTCCAAATGGTTTTTGCTCTCAATTGCCAAATGACGAAATGATGAATAACATGAAGGCCAAAAGTGTGGAGTTAAATTCTGATATTTCATGTATGAGTAGTGGCATGCCCTCAAACACTACTGGGTGGACGTCTTTTCAAGATTTAACTGATAATGTTTATCCAACTTTTCATTCTAGAAAAGTTAATTTTGATGACCTGCCATCATTGTCTCTTTCAGCTTATGATTCATACGTACCATATGAAGACCATTATCAGGATGCTAAGTTCAATGTAGGCCAATCGGTGAGACAAACACCTGATATTTTTTCTTCTATAGGGTCTCAGGCTTACCAATTTTATGAGAATGAGGATAATTATGCAGTTATATCTGGGATATCCAATCAATATCAAGATAGCAATGGTAGAATTGCTAGTTTTCAAGAAAATGTGGACAATTTGAATTTACAAGCTGCAAATATATCTTGGCCCCATGCCCAGGCACTAATTACCAGTGAGAAGCAGTTTGGTTGTGTTAAGAGAGAAGGAGGGGTTCGACATAAACTTGCTGATTCTCATCTTTCAAAAGGAAAATTTGAGAATTTCCATGTCGAGGAAGACCCTGATGTTTGCATTATTGAAGACATCAGTCATCCTGCTCCGACAAGTCGATCTACAATCAGTGGGAATTCGTCTAATATTTCTCAATCGTCTAGATATGCTGATTCTCAGTCTTACATGGCTGGAAGTACTAGGCTGAAGGCATGTGATGAGCGTAATATATTACGGGTTGCATTGCAGGATCTATCTCAGCCAAGGTCAGAAGTTAGTCTACCAGAAGGGTTGTTGGCAGTTCCTCTTTTAAGGCATCAGAGAATTGCTTTATCATGGATGGTTCAAAAGGAAGCATCAAGTTTTAATTGCTCAGGAGGAATTCTTGCAGATGATCAGGGACTTGGAAAAACAGTATCAACTATTGCATTAATATTAAAGGAAAGACCTCCGTTACCTAATGGGGGCAACAATGCCCACAAAAGTGAATTGGATTCTCTGAATCTGGATGTGGATGATGACGTGCTTCCTCAGAACGGTAGAGTAAAGGAAGAATCTAATATTTGTGAGGATGAGTCAAGTAGACATCCAATCAAGAGTATGAATTTGCAAAACCAAGCAAAGGGAAGGCCATCTGCCGGGACCCTTATTGTTTGTCCCACTAGTGTCCTACGTCAATGGGCAGAGGAGTTGCGTAGCAAGGTAACTAGTCAAACAAAAATCTCTGTGCTAGTTTACCATGGAAGCAATCGGACAAAAGATCCTTATGAGGTTGCAAAGTATGATGTTGTTATAACAACTTATTCCATTGTCAGCATGGAGGTTCCTAAGCAGCCTTCAGCTGACAAAGATGATGAGGAAAAAGGAAATGTTGAAGATCATGCTGTACCGAGTAGGAAAAGAAAAAGTCCCTCTAATTCTAGTAAAAATGGCAAGAAGAGATCAGATGGAACAGTTCTTGAAACTAATGCTCGCCCGCTTGCAAAGGTGGCATGGTTTAGGGTTGTCTTGGATGAGGCACAAAGTATAAAGAATCACAAAACTCAAGTTGCAAGGGCCTGTTGGGGTCTTCGTGCTAAGCGAAGATGGTGTTTGTCAGGGACTCCTATCCAGAATGCAATTGACGATCTCTACAGTTACTTCAGATTTCTAAGATATCACCCTTATGATGTCTATACATCATTTTATTCTAAAATTAAGAACCGAATTAGTAGAGATCCAGCAAACGGATATAGAAAGCTACAAGCTGTCTTGAAGACTATAATGTTACGCCGGACCAAAGGTACACTTCTTGACGGGGAACCTATTATTTCCTTGCCGCCTAAATATATAGAGCTGAAAAAGGTTGATTTTTCAACTGAGGAACGTGATTTCTATTACAAACTAGAGGCTGATTCACGTGCACAGTTCCAGGAATATGCTGATGCTGGCACTGTCAAGCAAAATTATGTCAACATTTTGCTGATGCTCCTGCGCCTTAGACAAGCTTGTGATCACCCTTTGCTTGTCAAGCGATACAATTCAAACTCTCTATGGAGATATTCGGTTGAGATGGCAAAGACACTTCCTCAGGAAAAACAAATCTCTCTTCTGCAATGTTTAGAGGCTTCTTTGGCCCTCTGTAGCATTTGTAACGATCCTCCGGAAGATGCATTTGTTTCAGTTTGTGGTCATGTTTTCTGTAACCAATGCATATGTGAACATCTTACTGGTGATGACAACCAGTGCCCTGCTGCAAATTGCAAAATTCGACTGAGCACATCTAGGGTATTCTCAAAAGTCACTCTGAACAATTGTCTTTCTGACCAGGGTTGTGATAATTCACCTGGTTGCCCTGCTTCTGAAGTGGAAGAATTTGAGCCTTGGTCTCAAAGTCAGTCATATGAATCTTCAAAAATAAAGGCTGCACTTGAGGTTTTGAAATCACTGCGTAAGCCACAGTCCTATACCTCAAAAAGCACTTCTGAGAATAGCACTTTGAGGGAAGATAATGATTGCCCTGGGAACCCCTCGGATGTTGAAAATGGGAAATCCTCAATTAATTCTCACGAGTGTCAAAATTTGTCTGATGAGAATAGATACCATAGTGATTCAGTTACTGTCGTAGGGGAGAAAGCTATAGTGTTTTCTCAGTGGACGAGGATGCTAGATTTGCTTGAAGAGTGTCTCAAGAAATCTTCGATTAATTATAGAAGGCTTGATGGAACAATGTCGGTTGTTGCCAGAGATAAAGCTGTTAAAGATTTTAACACTCTTCCCGAGGTATCAGTTATAATTATGTCTTTGAAGGCTGCCAGTCTTGGTCTAAACTTGGTGGTAGCTTGCCATGTTCTTATGCTAGATTTATGGTGGAATCCTACAACTGAAGACCAAGCAATAGATAGAGCACATCGAATTGGGCAGACTCGTCCTGTGACTGTCTTGAGATTAACTGTGAAAGATACAGTTGAAGATCGAATTCTAGCTCTGCAGCAAAAGAAGAGAACGATGGTTGCATCTGCCTTTGGGGAGGATGGAACTGGTGATCGTCAGAGTCGCCTCACTGTGGATGATTTAAAATATTTGTTCATGATGTGA 4029 0.4048 MADDDVDFSKLFHGDDDDDGMFYIDMNTVQKVLDEDDNCDFLEKFPDDSSSKNVSPSESGTHDSFQIQNGSQVLEEQQFSRLGFLDSVTSCSPFCSDGSDFGVRGSVGVSDSVANSWLDIEPENEGPQSQACSSPNAFPGNLSTLSPGQSDEVFCTERTRVSKHEIPACSVESSFPEAQSKDISICRDNLNPSPWKGENEIQFKHFREDVEFENTSISSIVDNDDINIEGYVEDTTGGVSGPQENDSCTSFEAFMDADRFLHVATSPDSTIGQGSHGSSDFIDYHGSSTYYEGMHSGPFVADSSLGIFPNGFCSQLPNDEMMNNMKAKSVELNSDISCMSSGMPSNTTGWTSFQDLTDNVYPTFHSRKVNFDDLPSLSLSAYDSYVPYEDHYQDAKFNVGQSVRQTPDIFSSIGSQAYQFYENEDNYAVISGISNQYQDSNGRIASFQENVDNLNLQAANISWPHAQALITSEKQFGCVKREGGVRHKLADSHLSKGKFENFHVEEDPDVCIIEDISHPAPTSRSTISGNSSNISQSSRYADSQSYMAGSTRLKACDERNILRVALQDLSQPRSEVSLPEGLLAVPLLRHQRIALSWMVQKEASSFNCSGGILADDQGLGKTVSTIALILKERPPLPNGGNNAHKSELDSLNLDVDDDVLPQNGRVKEESNICEDESSRHPIKSMNLQNQAKGRPSAGTLIVCPTSVLRQWAEELRSKVTSQTKISVLVYHGSNRTKDPYEVAKYDVVITTYSIVSMEVPKQPSADKDDEEKGNVEDHAVPSRKRKSPSNSSKNGKKRSDGTVLETNARPLAKVAWFRVVLDEAQSIKNHKTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYHPYDVYTSFYSKIKNRISRDPANGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKYIELKKVDFSTEERDFYYKLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWRYSVEMAKTLPQEKQISLLQCLEASLALCSICNDPPEDAFVSVCGHVFCNQCICEHLTGDDNQCPAANCKIRLSTSRVFSKVTLNNCLSDQGCDNSPGCPASEVEEFEPWSQSQSYESSKIKAALEVLKSLRKPQSYTSKSTSENSTLREDNDCPGNPSDVENGKSSINSHECQNLSDENRYHSDSVTVVGEKAIVFSQWTRMLDLLEECLKKSSINYRRLDGTMSVVARDKAVKDFNTLPEVSVIIMSLKAASLGLNLVVACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVKDTVEDRILALQQKKRTMVASAFGEDGTGDRQSRLTVDDLKYLFMM 1342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03163 1342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1010 1076 IPR013083 -
Vian1g03163 1342 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1178 1337 IPR001650 -
Vian1g03163 1342 SMART ultradead3 583 886 IPR014001 -
Vian1g03163 1342 Pfam Helicase conserved C-terminal domain 1185 1284 IPR001650 -
Vian1g03163 1342 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 428 1341 - -
Vian1g03163 1342 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 792 921 - -
Vian1g03163 1342 Coils Coil 437 457 - -
Vian1g03163 1342 CDD SF2_C_SNF 1187 1294 - -
Vian1g03163 1342 Gene3D - 681 772 IPR038718 -
Vian1g03163 1342 Gene3D - 796 910 IPR038718 -
Vian1g03163 1342 SUPERFAMILY RING/U-box 1022 1081 - -
Vian1g03163 1342 ProSiteProfiles Zinc finger RING-type profile. 1025 1064 IPR001841 -
Vian1g03163 1342 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 576 909 IPR027417 -
Vian1g03163 1342 MobiDBLite consensus disorder prediction 44 65 - -
Vian1g03163 1342 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 917 1341 IPR027417 -
Vian1g03163 1342 SMART ring_2 1025 1063 IPR001841 -
Vian1g03163 1342 Pfam SNF2-related domain 602 986 IPR000330 GO:0005524|GO:0140658
Vian1g03163 1342 CDD DEXDc_SHPRH-like 587 909 - -
Vian1g03163 1342 MobiDBLite consensus disorder prediction 762 784 - -
Vian1g03163 1342 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 698 871 IPR014001 -
Vian1g03163 1342 MobiDBLite consensus disorder prediction 761 804 - -
Vian1g03163 1342 Pfam Zinc finger, C3HC4 type (RING finger) 1025 1061 IPR018957 GO:0046872
Vian1g03163 1342 MobiDBLite consensus disorder prediction 1132 1168 - -
Vian1g03163 1342 SMART helicmild6 1201 1284 IPR001650 -
Vian1g03163 1342 ProSitePatterns Zinc finger RING-type signature. 1040 1049 IPR017907 -
Vian1g03163 1342 MobiDBLite consensus disorder prediction 121 145 - -
Vian1g03163 1342 MobiDBLite consensus disorder prediction 48 65 - -
Vian1g03163 1342 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 680 768 - -
Vian1g03163 1342 Gene3D - 556 646 IPR038718 -
Vian1g03163 1342 MobiDBLite consensus disorder prediction 122 145 - -
Vian1g03163 1342 Gene3D - 924 1342 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03163 Vian-Chr1 52755000 52762670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03163 510 1341 RAD5 or RAD16-like Gene Family AT1G61140 60.585 0.0 944
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vian1g03163 SNF2_N 5.4e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03163 - - gmx:100802436 2074.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03163 1 52755000 52762670 Vian6g01816 6 35587521 35596137 PCT