Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03159 ATGGGTTGTTGGAATTCAGACATGAATTTGCAAATTTTCTTGTTTTCAATGTTGACTTTCGGTGCAACTTTCTGTGTTGCGGACACTGATCCACTTGATGTTGCGACAATCAATAGTCTGTATGTGGCTCTTGGCTCACCACCCCTTGAGGGGTGGAAAGCCATAGGAGGAGATCCCTGCTTGGAACAATGGCAAGGTGTGCGTTGTGTCTTCTCCAACATAACTGCTTTGTCACTCTCAGCTAATAAATTAAATGGAAGCATTCCAGATGCCTTGTCCTCATTAACTCAATTGTCAGACTTGTCATTAAAAGATAACCATCTGAATGGAGAAATTCCAGATGCATTTCTACACTTTACTGATTTGATAAATATGGATCTGTCTGGAAACAACTTGAGTGGTCAGCTGCCTCCCTCAATGGGGAATTTGTCATCTCTTAACACATTACATTTGCAGAACAATCAACTTTCTGGGACCCTTTTTGTTTTGCAGGACCTCCCTCTTCAGGATCTGAATATAGAGAACAATATATTCTCTGGGCCAATTCCTCCGGAGTTGTTGAGTATCCCTAATTTCAGAAAAGATGGGAATCCGTTTAATACTACTATCATTCCATCACCTCCAGCTGCTTCCCCTGCACCTCTTGCTATGGCTCCCTCCCCAGAAATATCACCTTGGAAAGTGGCCAATAGTCCATCTGCTACCACCATAAAAGCTCCAATACCTGCAACTGCTGAGAGAAGACCAGAGAACAGGAGTTATAAGAAACACAACATGAACGTGTATAAAAGATCTTTGCATAAACGTACAAGCAGTGACTCCCCTTTTGAAGCAACTGATGATGAGCAGAAAGGATGGGGTTCAAAACTTCCAGCCTTGCAGCCAGCGCCACCACATAAACTCCCAATCATTCCTGGAGAGAATTTAATCATTAATCGAGCTATCTTTGGTGAAGAAACCAAAAGACAAATTGTAACAAATTCCATCAAAGTTTATACTGTTGCATCACTTCAGCAATACACAAATAGTTTTTCCCTAGAAAATTATATTGGCGAAGGCATGCTTGGCCCTGTTTATAGGGCTGAACTCCCTGATGGAAAGTTACTGGCAGTCAGGAAGCTGAATGCTGCTGCTTTGATTGACCTAAACCACGAACAGTTTCTTCAATTAGCTTCCAGTGTCTCCAAAATTCAACATGCTAATATTGTAAAGTTTATGGGCTACTGTGCCGAGCATAGCCAACACTTACTTGTATATGAGTATTGTAGTAATGGCACCCTTCATGATGCATTGCATACAGATGCTAAACTTCAGATTAACCTTTCATGGGATGATCGCATTCAAGTGTCACTTGGAGCGGCAAGAGCTTTAGAGTATTTGCATGAGTACTTTCAGCCACCTATTGTGCACGGAAACTTTACATCTGCTAATGTACTACTCAATGACAAGTGGGAAGTTCAGGTCTTGGATTGTGGATTAGGTTCTTTACTATCTTCAGGCTCCGCAAGTCGGTTGTCGGGACACCAACTCACAGCTAATGGTTACAGTGCCCCAGAATACGAGAATGGAAGTTATACACTTCAAAGTGATGTCTTTAGCTTTGGAGTTGTAATGCTAGAGCTCCTCACTGGACGAAAATCCTATGACAGCTCACTGGCTCGTGGAGAGCAGTTTTTGGTGAGATGGGCAGTCCCTCAACTCCATGACATAGATGCATTGTCAAAAATGGTTGACCCTTCTTTAAATGCAGAATATCCTAAGAAATCCTTGTCACGTTTTGCAGACATTATTTCCTCATGTATACAGCATGGACCTGAATTTCGACCAGCAATGTCAGAAATTGTTCAGGATCTCTTGCGAATGATGTAG 1869 0.4205 MGCWNSDMNLQIFLFSMLTFGATFCVADTDPLDVATINSLYVALGSPPLEGWKAIGGDPCLEQWQGVRCVFSNITALSLSANKLNGSIPDALSSLTQLSDLSLKDNHLNGEIPDAFLHFTDLINMDLSGNNLSGQLPPSMGNLSSLNTLHLQNNQLSGTLFVLQDLPLQDLNIENNIFSGPIPPELLSIPNFRKDGNPFNTTIIPSPPAASPAPLAMAPSPEISPWKVANSPSATTIKAPIPATAERRPENRSYKKHNMNVYKRSLHKRTSSDSPFEATDDEQKGWGSKLPALQPAPPHKLPIIPGENLIINRAIFGEETKRQIVTNSIKVYTVASLQQYTNSFSLENYIGEGMLGPVYRAELPDGKLLAVRKLNAAALIDLNHEQFLQLASSVSKIQHANIVKFMGYCAEHSQHLLVYEYCSNGTLHDALHTDAKLQINLSWDDRIQVSLGAARALEYLHEYFQPPIVHGNFTSANVLLNDKWEVQVLDCGLGSLLSSGSASRLSGHQLTANGYSAPEYENGSYTLQSDVFSFGVVMLELLTGRKSYDSSLARGEQFLVRWAVPQLHDIDALSKMVDPSLNAEYPKKSLSRFADIISSCIQHGPEFRPAMSEIVQDLLRMM 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03159 622 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 313 421 - -
Vian1g03159 622 Gene3D Phosphorylase Kinase; domain 1 309 421 - -
Vian1g03159 622 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 20 620 IPR046959 -
Vian1g03159 622 MobiDBLite consensus disorder prediction 266 286 - -
Vian1g03159 622 Gene3D Transferase(Phosphotransferase) domain 1 422 622 - -
Vian1g03159 622 Pfam Protein tyrosine and serine/threonine kinase 346 618 IPR001245 GO:0004672|GO:0006468
Vian1g03159 622 Gene3D Ribonuclease Inhibitor 39 194 IPR032675 -
Vian1g03159 622 ProSiteProfiles Protein kinase domain profile. 344 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03159 622 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 72 210 - -
Vian1g03159 622 MobiDBLite consensus disorder prediction 266 284 - -
Vian1g03159 622 SUPERFAMILY Protein kinase-like (PK-like) 324 618 IPR011009 -
Vian1g03159 622 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 422 622 - -
Vian1g03159 622 SUPERFAMILY L domain-like 45 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03159 Vian-Chr1 52666570 52673495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03159 301 622 Strubbelig Receptor Gene Family AT4G03390 62.422 7.93e-135 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vian1g03159 PK_Tyr_Ser-Thr 6.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03159 - - pvu:PHAVU_002G224200g 1046.19