Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03144 ATGAACGACCTTTTCTCAAACTCGTTCAAGAAATACAGTGACCTGAAAGAGCAGGCATACCTGGATGATGTGGAGGCGGGGAAAGAAAGCGTGAACCTTGATAAGTTCTTCGAGGAAGTGGAGGACGTGAAAGAGGACATGAGGAGCGTGGAGATGCTGTACAGAAGGCTGCAAGAGGCGAACGAGGAGAGCAAAACGGCGCACACGGCCAAGGCGATGAAGGAGGTTCGGGCGCGAATGGATAAGGACGTGGCGCTGGTGCTGAAGCGCGTGAAGGTGATAAAGGGGAAGCTGGAGGCGCTGGAGCGGTCGAACGCGGCGAACCGGAGCTTGCCGGGGTGCGGGCCGGGGTCGTCGGCGGACCGGACGAGGACGTCGGTGGTGAGCGGGTTGGGGAAGAAGCTGAAGGACATGATGGACGATTTCCAGGGGCTTAGGGCGCGCATACAGATGGAGTACAAGGAGACAGTGGAGCGGAGGTACTTCACGATCACGGGGGAGAAGGCGGAGGAGGAAACGATCGAGAATTTGATATCGAGTGGGGAGAGCGAGAGCTTTCTGCAGAGGGCGATTCAGGAGCAGGGGAGGGGTCAGATAATGGACACGATTTCGGAGATTCAGGAGCGGCACGACGCCGTTAAGGAGATTGAGAAGAACTTGATGGAACTGCACCAGGTTTTTCTGGACATGGCGGCGATGGTGGAGGCGCAGGGACAGCAGCTGAACAACATCGAGAGCCACGTGGCGCATGCGAGTTCGTTTGTGCGACGGGGCACCGAGCAGCTTCAGGATGCGAAAGAGATTCAGAAGAGTTCGAGGAAGTGGACCTGCTATGCCATCATTCTCGGCGCTATCCTCATTGTTTTGCTTCTCTTCCCTCTCCTCACCTCGCTCTTGCCTCATCTCTTGATGAGGTGA 918 0.5664 MNDLFSNSFKKYSDLKEQAYLDDVEAGKESVNLDKFFEEVEDVKEDMRSVEMLYRRLQEANEESKTAHTAKAMKEVRARMDKDVALVLKRVKVIKGKLEALERSNAANRSLPGCGPGSSADRTRTSVVSGLGKKLKDMMDDFQGLRARIQMEYKETVERRYFTITGEKAEEETIENLISSGESESFLQRAIQEQGRGQIMDTISEIQERHDAVKEIEKNLMELHQVFLDMAAMVEAQGQQLNNIESHVAHASSFVRRGTEQLQDAKEIQKSSRKWTCYAIILGAILIVLLLFPLLTSLLPHLLMR 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03144 305 CDD SNARE_syntaxin1-like 202 263 - -
Vian1g03144 305 SUPERFAMILY t-snare proteins 32 258 IPR010989 GO:0016020|GO:0016192
Vian1g03144 305 PANTHER SYNTAXIN 45 285 IPR045242 -
Vian1g03144 305 Pfam SNARE domain 240 291 IPR000727 -
Vian1g03144 305 SMART tSNARE_6 198 265 IPR000727 -
Vian1g03144 305 SMART SynN_4 28 154 IPR006011 GO:0016020
Vian1g03144 305 Gene3D - 33 160 - -
Vian1g03144 305 CDD SynN 33 190 IPR006011 GO:0016020
Vian1g03144 305 Pfam Syntaxin 35 238 IPR006011 GO:0016020
Vian1g03144 305 Gene3D - 194 295 - -
Vian1g03144 305 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 30 160 - -
Vian1g03144 305 FunFam Syntaxin 132 196 296 - -
Vian1g03144 305 Coils Coil 40 63 - -
Vian1g03144 305 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vian1g03144 305 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03144 Vian-Chr1 52479149 52480066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03144 1 304 SNARE and Associated Proteins AT1G61290 75.329 3.10e-176 487
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03144 K08486 - gmx:100818999 493.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03144 1 52479149 52480066 Vian1g03144 1 52479149 52480066 ECH
Vian1g03144 1 52479149 52480066 Vian6g01829 6 35729546 35730400 PCT