Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03130 ATGGGTGATGGAGAAGAATTCGTCGGAGCTTCGGGTCTGCGGCGAGCGGTGGAGCTCATCCTTGCCGTGCTCTCTCTGTCGCACTCGATTCGTGTCTTCGCGGGGAAATGGCAGCTCATTCGTAACAAGCTGGAGGAGCTTCACGGAGGTTTAGTTGCCGCCGAGAACTGCGACCCCGGGGAGAGCCCGTCGCTTTCGCGGCTGGTGGGGGCGGTGGCGGCCACCGCGACGGAATGCCACGATCTGTGTCGGCGCTGCGTGGATGTTTCCTACAGTGGGAAGCTTCTGATGCAGAGCGATTTGGACGTGGCGTTCGCGAAGCTCGATGCGCACGCGAGGAAGCTCTCTGAGATATACAAAAGGGGGATTTTAACAAATGGGTTCGCGCTGGTTGTGTCAAAGCCGAGTCTTGGCGGTTCGAAAGAGGACATGAGGTTCTACGTGAGGGACTTAACGACGAGGATGAAGATTGGAGATTTGGGGATGAAACGACAGGCGTTGCGGAACCTCCTAGAAGTTGTGCTGGAGGATGAAAAGTATGTGAAGGTGGTTGTTGGCATGGGTGACGTGGTTCATTTGTTGGTGGGGTTTTTGGGTTCTAATGAGGCGGAAATCCAGGAGGAGAGTGCTAAGGTGGTTTCTGTGGTTGCTGGATTTGATTCTTACAAAGGGGTTTTGGTTGGGGCGGGGGTGATTGCTCCTTTGGTTAAGGTTCTGGATTGTGGGAGTGATTCGGGGAAGGTTGCGGCGGCGAGGTGTTTGGTGAAGTTGACTGAAAATTCGGACAATGCTTGGTGTGTTTCGGCTCATGGGGGGGTCAGTGTGCTGTTGAAGATTTGTGGTGGTGGTGATTGTGGAGGTGATTTGGTCGCACCTGCTTGTGGGGTGTTGAGGAATCTCGTTGGCGTTGAGGAGATTAAGAGGTTTATGGTTGATGAGGGTGCTGTGTCAACTTTCATTAAGCTCGTGAGATCGAAGGAGGAAGCGATTCAGGTGAATTCGATTGGGTTCATTTTGAGTATTGCCTCTGGGGATGAGTTGGTTAGGCAGATGGTGATCAGAGAAGGAGGGATTCGTGCTTTGTTGCGTGTTTTGCATCCTAAGTGGTCTTATTCATGTAAAACAAGGGAGGTAGCAATGAGGGCTGTTGAGGATTTGTGTTTCTGTTCACCTAGTTCTGTGGGTGTGTTGATGAGTTATGGCTTTGTGGATCAACTGACATATTACATTCGAAATGGGGAGGTTTCGATTCAGGAGTTGGCGTTGAAAGTGGCGTTTAGGTTGTCTGGAACATCTGAGGAGGCCAAGAAAGCAATGGGGGACGCAGGGTTTATGCCAGAGTTTGTTAAGTTTCTTAATGCAAAGTCCTTTGAGGCTCGAGAAATGGCAGCCGAGGCACTCTCTGGCATGGTTACGGTGCCTAGAAATAGAAAGCGATTCGTGCAGGATGACCATAATATTGCCCTTCTTCTGCAGTTGCTTGATCCAGAGGAGGGGAATTCCGGTAATAAAAAGTTCTTAATCTCTATATTAATGTCGTTAACGAGTTGCACTAGTGGGAGGAAAAAGATTGTTAGTTCTGAATATGCAAAAAACATAGAAAAACTCGCTGAAGTTTCTTCTGAAGCCAAGAAACTTGTCAAGAAGCTATCCACAAACCGGTTCCGAAGTATGTTGAATGGAATCTGGCACTCGTGA 1698 0.4965 MGDGEEFVGASGLRRAVELILAVLSLSHSIRVFAGKWQLIRNKLEELHGGLVAAENCDPGESPSLSRLVGAVAATATECHDLCRRCVDVSYSGKLLMQSDLDVAFAKLDAHARKLSEIYKRGILTNGFALVVSKPSLGGSKEDMRFYVRDLTTRMKIGDLGMKRQALRNLLEVVLEDEKYVKVVVGMGDVVHLLVGFLGSNEAEIQEESAKVVSVVAGFDSYKGVLVGAGVIAPLVKVLDCGSDSGKVAAARCLVKLTENSDNAWCVSAHGGVSVLLKICGGGDCGGDLVAPACGVLRNLVGVEEIKRFMVDEGAVSTFIKLVRSKEEAIQVNSIGFILSIASGDELVRQMVIREGGIRALLRVLHPKWSYSCKTREVAMRAVEDLCFCSPSSVGVLMSYGFVDQLTYYIRNGEVSIQELALKVAFRLSGTSEEAKKAMGDAGFMPEFVKFLNAKSFEAREMAAEALSGMVTVPRNRKRFVQDDHNIALLLQLLDPEEGNSGNKKFLISILMSLTSCTSGRKKIVSSEYAKNIEKLAEVSSEAKKLVKKLSTNRFRSMLNGIWHS 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03130 565 Gene3D - 147 554 IPR011989 -
Vian1g03130 565 SMART arm_5 219 259 IPR000225 GO:0005515
Vian1g03130 565 SMART arm_5 260 302 IPR000225 GO:0005515
Vian1g03130 565 SMART arm_5 303 343 IPR000225 GO:0005515
Vian1g03130 565 SMART arm_5 345 388 IPR000225 GO:0005515
Vian1g03130 565 SMART arm_5 177 218 IPR000225 GO:0005515
Vian1g03130 565 SMART arm_5 432 472 IPR000225 GO:0005515
Vian1g03130 565 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 271 315 IPR000225 GO:0005515
Vian1g03130 565 SUPERFAMILY ARM repeat 139 517 IPR016024 -
Vian1g03130 565 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 10 564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03130 Vian-Chr1 52223130 52224827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03130 131 421 U-box Gene Family AT2G23140 25.926 8.44e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03130 - - gmx:100809382 988.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03130 1 52223130 52224827 Vian6g01845 6 35859689 35861362 PCT