Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03125 ATGACGAAAAAACCGAAGGCGGAGGGAGCGGAGGAGCCTTTGCCGGACCACCTCCGGTGTGGGCGCACCGACGGCCGGCAATGGCGGTGCCGGCGGAGAGTGAAGGACAGTCTGAAGCTGTGCGAGATTCACTACCTCCAAGGTCGTCATCGGCAGTACAAGGAGAAGGTTCCCGAGTCCTTGAAGCTTCACCGGAAGCGCAAGACGAGCGACGAGGAGCCTAGTGCTGTGGACAATGTCGAATCTAGGGCACGGAGAACCTCGAGAATCGTGAAGAAGAAGCGCAGGCTTTCGGAGGGTCCCGAGTCGCTGGTGGCGGCGACTCCTTCTCTCGCGAAGAAGAAGGCGCCGAAGCAGGGCGATATGCAGTTGGAGCTCATAAGGATGGTTCTCAAGAGAGAGGCGGAGAAGAAGAACAAAAACAACAAGGGTAAGAAGAAAAATAAGAAGAAGAACAAGAAGAAGAAGAAAAAAGAGGAGGAAGAGGAATTGTGTTACGGTGAAGGGGAGTTGAGGAGGGAATTGCCGAATGGTGTGATGGAAATCTCTCCGGCTTCGCCTACTCGTGATTACGACAATGTGGCTTCGCATTGTGACGTGAAAGTTGGTGTTGATTCTAGAACTGTTACTCCGCGTTACTTTAGGTCCAAGAATGTTGATAGAGTCCCTGCGGGGAAGTTGCAGATTGCGCCGTATGGATCGAACTTGAAGAAGGGTACCAAGGGTAAGAGGAAGAAGTGTCATTGGTGCCAGAGAAGCGAGTCTTGCAATCTGATCCAGTGTTCGAGCTGTGAGAGGGAGTTTTTCTGCATGGATTGCATTAAAGAGCGGTTTGTTATTGGCCTCACCTGTGATCAAACTTTTGAGGCCATGCTGAAGCATGAATTTGAGACACGTGGTATTTGGACACTCAAAATGAAGTTAAGAAGGCATGTCCAGTTTGTCGTGGAGCTTGCACTTGTAAGGATTGCTCAGCAAGTCAATGTAAAGACAGTGAAAGAATATTTGACTGGTAAGAGCAGCGTTGATAGAATATTGCATTTTCATTATTTGATCTGCATGCTCCTTCCAGTACTAAAGCATATAAGTGAAGATCAGAATATTGAGCTAGAAACAGAAGCAAAAGTTAAAGGAAAAAATATTTCTGATATTCAAATCAAGCAGGTTGAATTTGGCTGCAATGAGAAAAATTATTGCAATCACTGCAAGACACCCATTTTGGATCTCCATAGAAGCTGTCCGAGCTGTTCATATAGCCTATGCTCAAGTTGTTGTCTGGAATTAAGTCAGGGAAAAGCATCTGGAGAAATTAACTTATCTACATTCAATCGACCTGATAAAATGAAAAGTAGCATTGCTAGTGAGAGCCAGGATTTGGACGAGAAGCCCATATCTAGTAGCAATTTAACCGATACTTCAATATTGACTGAGTGGACAAATTGTAATGGCATTGATACTCTCTCATGCCCTCCTAGAGAATATGGTGGTTGTGGTAATAGCCACCTTGAGTTGAGATCTGTTTTCCCCTCCAATTGGATCAAAGAGATGGAAGTAAAGGCAGAAGAAATTGTTTGCAGCTATGACTTTCCTGAAACTTCGGATAAAAGTTCAAGCTGCTCATTGTGTTTTGACACCGATCATAATACTAACAGATACAAGCAGTTGCAAGAAGCAGCTTTAAGAGAAGATTCCAATGATAATTACTTGTTTTGTCCGACTCTGTTGGACATAAGTGGTGATAACTTTGAGCACTTTCAGAAACACTGGGGAAAAGGTCATCCTATAGTGGTTCAAGATGTTCTCCAAAGTACATCAAACCTCAGCTGGGATCCACTGATCATGTTCTGTACTTATCTTGAGCAGAATATTACGAGATATGAGAATAATAAAAATGTACTTGAATCTTGTTTGGATTGGTGGGATGTTGAAATTAACATTAGGCAGTACTTTACTGGGTCTGTAAAACGCCGTCCTCAAAGAAATACTTGGCATGAGATGCTCAAACTAAGGGGGTGGCTTTCTTCCCAAATATTCAAAGAGCTGTTTCCAGCTCATTTTGCTGAGGTAATTGATACTCTACCAGTTCAAGAATACATGCATCCCTTGTCAGGCCTTCTGAATTTAGCTGCAAATTTGCCACATGGGAGTGCAAAACATGATATTGGACCATATCTCTATATTTCTTATGGCTCTGCTGACAAAGAAACTGATTCTGTGACAACACTCTGCTATGACCCATATGATGTTAATATTATGACACATACCACAGATGCCCCCCTCTCTACAGAACAACTTACTAAAATAAGAAAATTACTGAAAAAGCACAAAACTCTGTGTCAAATGAAGACTATTGGTACTGAGGAGCCACTGGAACAAAAAGTGAATGGAATGAAATTATTGCATGTTGAAGAAACGGAGCAAAGAGGCTTGCAGAGTATGGTTGAAGAAGGAATGAACTTTTTCAGGAGAGTCAATAGAACGTCTTGCATCTCAACTGAAGCTAAGAGAGTTTCTAGTCAGAGCATGGACAGCAATGTTTCCCAGAATGGAGACTGTGATTTCTTTTCTGAATCTGATTCGGGACGCACTTTACTTCTCCTTGGGACTGTTCAAACCAATGAAATCTCTAAACAAGATATTCCTAGAAAACCCTTTGAAAGCTCAAAAAGACATAAAAATAAGTTTTCTGAGCATTTGGGTGCCCAGTGGGATGTCTTTCGCAGACAAGATGTACCGAAGCTCATAGAATACCTTAAAAGACACTATGATGAATTTTCTTGTACCCGTGACCATCACAAGAAGATGGTTCACCCAATTCTAGATCAAAACATTTTTCTTGATAGTACTCACAAAAAGAGATTAAAGGAGGAATTTAAGATTGAACCTTGGACTTTTCAGCAACACGTTGGACAAGCTGTCATCATTCCTGCTGGATGTCCATACCAGATCAGGAATTCTAAGTCTTGTGTTCATGCGGTATTGGAATTTGTGTCCCCTGAAAATGTTACAGAGGGTATCCAGTTGATTGATGAGGTCAGACTATTGCCTCAAGAGCATAAATCAAAAGCAGACATGCTGGAGGTAGATATTGCAATGCTATCATTTATCATTTCCTGCTTTCTCCTATTAGTTGTTGCATTGCATAGAATTAACAAGCCTTTCTCTTTTTGGCATCCATGA 3180 0.4233 MTKKPKAEGAEEPLPDHLRCGRTDGRQWRCRRRVKDSLKLCEIHYLQGRHRQYKEKVPESLKLHRKRKTSDEEPSAVDNVESRARRTSRIVKKKRRLSEGPESLVAATPSLAKKKAPKQGDMQLELIRMVLKREAEKKNKNNKGKKKNKKKNKKKKKKEEEEELCYGEGELRRELPNGVMEISPASPTRDYDNVASHCDVKVGVDSRTVTPRYFRSKNVDRVPAGKLQIAPYGSNLKKGTKGKRKKCHWCQRSESCNLIQCSSCEREFFCMDCIKERFVIGLTCDQTFEAMLKHEFETRGIWTLKMKLRRHVQFVVELALVRIAQQVNVKTVKEYLTGKSSVDRILHFHYLICMLLPVLKHISEDQNIELETEAKVKGKNISDIQIKQVEFGCNEKNYCNHCKTPILDLHRSCPSCSYSLCSSCCLELSQGKASGEINLSTFNRPDKMKSSIASESQDLDEKPISSSNLTDTSILTEWTNCNGIDTLSCPPREYGGCGNSHLELRSVFPSNWIKEMEVKAEEIVCSYDFPETSDKSSSCSLCFDTDHNTNRYKQLQEAALREDSNDNYLFCPTLLDISGDNFEHFQKHWGKGHPIVVQDVLQSTSNLSWDPLIMFCTYLEQNITRYENNKNVLESCLDWWDVEINIRQYFTGSVKRRPQRNTWHEMLKLRGWLSSQIFKELFPAHFAEVIDTLPVQEYMHPLSGLLNLAANLPHGSAKHDIGPYLYISYGSADKETDSVTTLCYDPYDVNIMTHTTDAPLSTEQLTKIRKLLKKHKTLCQMKTIGTEEPLEQKVNGMKLLHVEETEQRGLQSMVEEGMNFFRRVNRTSCISTEAKRVSSQSMDSNVSQNGDCDFFSESDSGRTLLLLGTVQTNEISKQDIPRKPFESSKRHKNKFSEHLGAQWDVFRRQDVPKLIEYLKRHYDEFSCTRDHHKKMVHPILDQNIFLDSTHKKRLKEEFKIEPWTFQQHVGQAVIIPAGCPYQIRNSKSCVHAVLEFVSPENVTEGIQLIDEVRLLPQEHKSKADMLEVDIAMLSFIISCFLLLVVALHRINKPFSFWHP 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03125 1059 Pfam WRC 15 56 IPR014977 -
Vian1g03125 1059 ProSiteProfiles JmjC domain profile. 701 1013 IPR003347 -
Vian1g03125 1059 Pfam JmjC domain, hydroxylase 898 991 IPR003347 -
Vian1g03125 1059 MobiDBLite consensus disorder prediction 52 163 - -
Vian1g03125 1059 SUPERFAMILY Clavaminate synthase-like 581 1032 - -
Vian1g03125 1059 ProSiteProfiles WRC domain profile. 14 60 IPR014977 -
Vian1g03125 1059 MobiDBLite consensus disorder prediction 139 154 - -
Vian1g03125 1059 MobiDBLite consensus disorder prediction 52 86 - -
Vian1g03125 1059 MobiDBLite consensus disorder prediction 1 26 - -
Vian1g03125 1059 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 16 1030 IPR045109 GO:0032454|GO:0033169
Vian1g03125 1059 SMART cupin_9 682 1013 IPR003347 -
Vian1g03125 1059 Coils Coil 132 163 - -
Vian1g03125 1059 Gene3D Cupin 574 1022 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03125 Vian-Chr1 52051796 52057615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03125 7 116 GRF Transcription Factor Family AT4G37740 31.897 1.42e-06 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vian1g03125 JmjC 1.2e-10 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03125 K15601 - gmx:100810673 1592.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03125 1 52051796 52057615 Vian6g01850 6 35899588 35905345 PCT