Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03124 ATGACGTCACACTCTCACTACCAGCCCGACTTAGACGCCGACTCCGTCACCTCCTCCCCTCGCTCTGACCATTTCCACGACGCGCCGCCGCGTGTCCGCTTCATGTGCAGTTTTGGCGGCAAGATCCTCCCCCGTCCCCACGACAACCAGCTCCGTTATGTCGGTGGCGACACTCGAATCGTCGCGGTCCACCGCTCCATCTCCTTCTCCGCCCTCATTCTCAAACTCTCCAAACTCTCAGGCATGACCAACATAACCGCGAAGTACCAGCTCCCGAACGAGGATCTGGACGCGTTAATCTCGGTCACGACGGATGAAGACGTGGAGAACATGATGGACGAGTACGACCGCGTGGCACAGAATCAGAACCCGCGATCGGCGCGGCTTCGGCTCTTCCTCTTCCCCGAAGGGGAAGACTCTCGAACCAGTAGCATCAGCTCGCTATTGAACGGCTCAGCCAAACGCGAGAACTGGTTCCTCGACGCACTAAACGGTGGCGTTTCGGGTCTCGAGCGTGGCCGCTCTGAAGCCTCTTCCATGGTCTCGGAAGTACCCGATTACCTCTTCGGATTAGACAACTCCGACGACACACACCAACGCGACCCACGACCCAAGGACCGACCCGTTCTCCAAGACAACGTTTCCGTTTCGGATCCGGGTTCTCCCGCCCCGGTTGTTTCCTCACCGTACTGTTCCACCTCATCAGCGCCCTGCGTTCCTTCTCTTCCGAACCTTCCCCCAGTAAAGACTAAACTTTCAAACTCTGTTGCTGATTCGGACTCCAAGGAAAATCAAATGGAACCTGAAACGGAACCGCAACCCAACCTCAACCAAAACCTCTACCCGGGTAACCCTGTAGTCCACTACCCCCAAGAATCTGCTTATTCTGCTCATACAGTAAACCCGGTTCCTGTTTTCTATGTTCCCGGTCCGATTCAACCGGGAACTGTGCCGGTTAATATGCAGCAGACACCTTACTCCTACGTTCAACAACCATACCATGCAGTGGTGCCATCTCAGGTTCCCATCGGCTACCATCATTTGATTCCGGGTTCGGGTCAAGTATATGGTGCAGGCGTGAGGCAGATGACTCCACTGCAACCTTACAATCCTTCCGCCGCAGTGGTTCACGACGGTTTGAAACAGCACGTGTATCATGCCGTGCCAAATTCCGGCCCGGTTCCCGTACACCCGATGATGCCCATGACCGGTGCTGATGAACTGCAGAGAGGTGGAGCGGAGTACATGGTGGGTCGGGGCCCCAATTCGCTGAATAACTGA 1281 0.5589 MTSHSHYQPDLDADSVTSSPRSDHFHDAPPRVRFMCSFGGKILPRPHDNQLRYVGGDTRIVAVHRSISFSALILKLSKLSGMTNITAKYQLPNEDLDALISVTTDEDVENMMDEYDRVAQNQNPRSARLRLFLFPEGEDSRTSSISSLLNGSAKRENWFLDALNGGVSGLERGRSEASSMVSEVPDYLFGLDNSDDTHQRDPRPKDRPVLQDNVSVSDPGSPAPVVSSPYCSTSSAPCVPSLPNLPPVKTKLSNSVADSDSKENQMEPETEPQPNLNQNLYPGNPVVHYPQESAYSAHTVNPVPVFYVPGPIQPGTVPVNMQQTPYSYVQQPYHAVVPSQVPIGYHHLIPGSGQVYGAGVRQMTPLQPYNPSAAVVHDGLKQHVYHAVPNSGPVPVHPMMPMTGADELQRGGAEYMVGRGPNSLNN 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03124 426 CDD PB1_UP2 35 134 - -
Vian1g03124 426 SUPERFAMILY CAD & PB1 domains 47 143 - -
Vian1g03124 426 SMART PB1_new 46 136 IPR000270 GO:0005515
Vian1g03124 426 PANTHER OS05G0427100 PROTEIN-RELATED 13 357 - -
Vian1g03124 426 Gene3D - 52 135 - -
Vian1g03124 426 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 51 136 - -
Vian1g03124 426 MobiDBLite consensus disorder prediction 214 239 - -
Vian1g03124 426 MobiDBLite consensus disorder prediction 268 282 - -
Vian1g03124 426 MobiDBLite consensus disorder prediction 1 16 - -
Vian1g03124 426 Pfam PB1 domain 47 135 IPR000270 GO:0005515
Vian1g03124 426 MobiDBLite consensus disorder prediction 1 28 - -
Vian1g03124 426 MobiDBLite consensus disorder prediction 247 261 - -
Vian1g03124 426 MobiDBLite consensus disorder prediction 187 282 - -
Vian1g03124 426 MobiDBLite consensus disorder prediction 193 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03124 Vian-Chr1 52014935 52016310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03124 26 171 MAP Kinase Kinase Kinase AT5G57610 45.946 1.15e-30 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03124 - - gmx:100803004 728.398