Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03122 ATGGGAAGAGGAGGTTCGATCAAAATCAAAGGTGACGGAAACTTGGTTGTTTTCGATGGAGAGAACAACGAGGTGTGGTCAACTAACAAGTCTATATCGACGAGCAACACAACAGCTGTTCTTGGTGATGACGGGAACCTTGTTCTTTCAGAAGAATCAGAACATGAGAAAAAGGTGTGGCAAAGCTTTGAGAATCCAACTGATACCTTCGTGCCGGGTATGTCCCTACCAATTAATGCTGGAACGAGTATGTTCAGGTCGTGGAAATCAGCAACGGATCCTTCACCGGGAAACTACTCAATGGGGGTTGACTCTGGGGGATCAACTATACAGATTTTGATTTTGGATGGGGAAAAAAGGAGGTGGAGAACTGGGTACTGGGATGGTAGAGTATTCACTGGTGTCTCTAATATGACAGGAAGCTCTCTTTTTGGTTTTAAACTTAATGGGAATCATTTTACATATACATGGAATGAAACTGAAAAGGTGAGGTTTCAGATAACCTGGGATGGGTTTGAAAAGAAGTTTATATCGAATGAAGATGAGACACAATGGAATAATACACAACACGAGCCTTATAATAAGTGTGAGCATTATAATTTTTGTGGCAATTTTGCAGTGTGTGATATCTCTAAGGCATCTGTTTGTAGTTGCTTGCACGGGTTTCAACAAGGGGAATTGAGTGAGTGGAATGATGGAAATTCAGGGGGTTGTAAGAGGAGGACTCCACTGAAGGCTGAGAGAAATAGTTCTGGAACTGAGGTTACTGTTGGTGATGATGGTTTCTCCGTTCAAAGCTGTACAAAGTTGCCAGATTTTGCACGTCTGGAGAGTCCTTCTAACGATGAGGAATGCAAGCGGTTTTGTCTGCAGAATAGTTCTTGTACTGCGTATTCATATACAATTGGAATTGGGTGCATGATTTGGTATGTGGACTTGGTCGATGTTCAACACACTGAAAATGATATTGGAAGTGTACTCAACATCCGTCTTGCTGATTCTGAGTTAGAAGCAAGCGATGGAGAGAAAAAGTCCAAAACTTGGATAATAATAATAATAACTGTTGTGGTGGTGCTGATCTGCCTTGGGATCTCTGTATTGCTGGTATGGAGGTTTAAGAGAAAACGTGAAGCTTCCCTGGCTTCGGCTAACAACATTGGTGAGTTTTCGATCATTGATCCAACGAGGAGTACAGATTTATCGACAGAATTTTCAGGATCAACTGACTTAGGTTTGGAAGGGAATAAGGCAGAGCTTCCATTCTTCACTTTGACCTTCCTTGCAGCAGCAACAGACAATTTCTCCGAAAAAAATAAGCTGGGACAAGGGGGATTTGGTCCTGTATACAAGGGGAAGCTTCCAGGAGGAGAGGAAATAGCTGTTAAGAGGCTTTCAAGAAAGTCTAGTCAAGGATTAGAGGAGTTCAAGAATGAAATGATGCTAATAGCCAAACTACAACATAGAAATCTGGTTAGACTGCTTGGATGTTCAATTCAAGGAGAAGAAAAAATGCTGGTATACGAGTACTTGCCAAACAAAAGCTTGGACTGTTTTTTATTTGATCCAGTGAAGAAAACACAACTAGACTGGACAAAGCGCTTTGAAATAATTGAAGGCATTGCAAGAGGGCTACTTTACCTGCACCAGGATTCAAGACTACGAATAATTCATCGGGATCTTAAAGCAAGCAACATTTTATTAGATGAAAGCATGCATCCAAAAATTTCAGACTTTGGCTTAGCCAGAATATTTGGAGGAAACCAAAATGAAGCAAGCACAAACAGAGTGGTTGGTACATATGGCTATATGTCGCCGGAATATGCAATGGAAGGTCTCTTTTCAGTTAAATCTGACGTCTATAGTTTTGGTGTACTGCTACTAGAGATTATGAGTGGCCGCAGGAACACTAGCTTTCGCAACACAGAAGATTCAAGTCTCATAGGATATGCCTGGCACATGTGGAGTGAGCAGAGAGTAATGGAGCTTCTTGATTCTTCCATTGGTGATTCAACTCCAAAGAGTAAAGCATTGAGATTCATACACATAGCAATGTTATGTGTGCAAGACTCAGCATCTCGCAGACCAAACATGGCCTCTGTATTGTTAATGCTGGCAAGTGAAGACACAACTCTTCCTCTGCCTAAACAACCTTTGGTCACTGCTTCCATGAGGAAATTTGATGATGGAGATCAATCTTATAGCGAAGGCCTTGACGTGTCAAACGATTTGACAGTTACAATGGTGACAGGGAGATAG 2256 0.4158 MGRGGSIKIKGDGNLVVFDGENNEVWSTNKSISTSNTTAVLGDDGNLVLSEESEHEKKVWQSFENPTDTFVPGMSLPINAGTSMFRSWKSATDPSPGNYSMGVDSGGSTIQILILDGEKRRWRTGYWDGRVFTGVSNMTGSSLFGFKLNGNHFTYTWNETEKVRFQITWDGFEKKFISNEDETQWNNTQHEPYNKCEHYNFCGNFAVCDISKASVCSCLHGFQQGELSEWNDGNSGGCKRRTPLKAERNSSGTEVTVGDDGFSVQSCTKLPDFARLESPSNDEECKRFCLQNSSCTAYSYTIGIGCMIWYVDLVDVQHTENDIGSVLNIRLADSELEASDGEKKSKTWIIIIITVVVVLICLGISVLLVWRFKRKREASLASANNIGEFSIIDPTRSTDLSTEFSGSTDLGLEGNKAELPFFTLTFLAAATDNFSEKNKLGQGGFGPVYKGKLPGGEEIAVKRLSRKSSQGLEEFKNEMMLIAKLQHRNLVRLLGCSIQGEEKMLVYEYLPNKSLDCFLFDPVKKTQLDWTKRFEIIEGIARGLLYLHQDSRLRIIHRDLKASNILLDESMHPKISDFGLARIFGGNQNEASTNRVVGTYGYMSPEYAMEGLFSVKSDVYSFGVLLLEIMSGRRNTSFRNTEDSSLIGYAWHMWSEQRVMELLDSSIGDSTPKSKALRFIHIAMLCVQDSASRRPNMASVLLMLASEDTTLPLPKQPLVTASMRKFDDGDQSYSEGLDVSNDLTVTMVTGR 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03122 751 CDD STKc_IRAK 440 704 - -
Vian1g03122 751 PIRSF SRK 2 751 IPR024171 GO:0004674
Vian1g03122 751 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 403 509 - -
Vian1g03122 751 Gene3D - 2 63 IPR036426 -
Vian1g03122 751 Gene3D Transferase(Phosphotransferase) domain 1 510 712 - -
Vian1g03122 751 Gene3D Phosphorylase Kinase; domain 1 402 509 - -
Vian1g03122 751 ProSiteProfiles PAN/Apple domain profile. 257 332 IPR003609 -
Vian1g03122 751 ProSitePatterns Serine/Threonine protein kinases active-site signature. 555 567 IPR008271 GO:0004672|GO:0006468
Vian1g03122 751 Pfam D-mannose binding lectin 5 89 IPR001480 -
Vian1g03122 751 Pfam S-locus glycoprotein domain 122 224 IPR000858 GO:0048544
Vian1g03122 751 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 510 712 - -
Vian1g03122 751 SUPERFAMILY alpha-D-mannose-specific plant lectins 4 94 IPR036426 -
Vian1g03122 751 Pfam Protein tyrosine and serine/threonine kinase 437 701 IPR001245 GO:0004672|GO:0006468
Vian1g03122 751 ProSiteProfiles Bulb-type lectin domain profile. 1 62 IPR001480 -
Vian1g03122 751 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 50 719 - -
Vian1g03122 751 SMART serkin_6 434 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03122 751 SUPERFAMILY Protein kinase-like (PK-like) 418 728 IPR011009 -
Vian1g03122 751 ProSiteProfiles Protein kinase domain profile. 434 711 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03122 751 SMART ntp_6 257 331 IPR003609 -
Vian1g03122 751 CDD PAN_AP_plant 259 332 - -
Vian1g03122 751 Pfam PAN-like domain 258 316 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03122 Vian-Chr1 51987703 51991114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03122 422 746 Receptor kinase-like Gene Family AT4G11530 57.831 1.63e-130 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vian1g03122 PK_Tyr_Ser-Thr 5.7e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03122 - - vum:124821534 1484.93