Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03117 ATGGACGAGAAGATGCTGGTCTATGAGTACATGGAAAATAGAAGCCTTGATGCAATTTTGTTTGATAAGGCAAAAAAATCCTCACTTGACTGGCAAATGCGCTTCAACATTATATGTGGCATTGCCAGAGGGCTTCTGTATTTGCACCAAGATTCCAGATTTAGGATCATACACAGGGATCTCAAGGCAAGCAACATTCTACTTGACAAAGAGATGAACCCAAAGATATCAGATTTTGGTATGGCTAGAATTTTTGGCACGGATCAGATAGAAGCAAATACGATGAGAATTGTTGGAACATATGGGTACATGTCCCCTGAATATGCTATGGATGGAGTCTTCTCAGTAAAATCTGATGTTTTTAGTTTTGGGGTTCTTGTGCTGGAGATAGTAAGTGGAAAAAAGAACAGAGGATTCTATTTGGCCAACAAAGAATTGAATCTTCTAGGACATGCGTGGAAGTTGTGGATGGAAGGAAATGCATTGGAACTGAGTGATTCGTCTATTGACACATCATATTCAGCATCAGAAGTTCATAGATGCATACAAGTGGGTCTCTTATGCGTGCAAGAGCGTGCAGAAGACAGGCCAACGATGTCTTCAGTGGTGTTGATGCTGAGTAGTGATACTGCATCAATGTCACAACCCAAAAGCCCAGGGTTTTGTCTAGGAAGAAATCCTACGGAAACTGAATCTTCTTCAAGTAAACTAGAAGAATCATGCACTGTGAACCAAGTCACTGTCACAATGATAGATGCTAGGTAG 765 0.4092 MDEKMLVYEYMENRSLDAILFDKAKKSSLDWQMRFNIICGIARGLLYLHQDSRFRIIHRDLKASNILLDKEMNPKISDFGMARIFGTDQIEANTMRIVGTYGYMSPEYAMDGVFSVKSDVFSFGVLVLEIVSGKKNRGFYLANKELNLLGHAWKLWMEGNALELSDSSIDTSYSASEVHRCIQVGLLCVQERAEDRPTMSSVVLMLSSDTASMSQPKSPGFCLGRNPTETESSSSKLEESCTVNQVTVTMIDAR 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03117 254 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 11 214 - -
Vian1g03117 254 ProSitePatterns Serine/Threonine protein kinases active-site signature. 56 68 IPR008271 GO:0004672|GO:0006468
Vian1g03117 254 Gene3D Transferase(Phosphotransferase) domain 1 11 218 - -
Vian1g03117 254 Pfam Protein tyrosine and serine/threonine kinase 3 204 IPR001245 GO:0004672|GO:0006468
Vian1g03117 254 MobiDBLite consensus disorder prediction 216 238 - -
Vian1g03117 254 SMART serkin_6 1 206 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03117 254 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 253 - -
Vian1g03117 254 SUPERFAMILY Protein kinase-like (PK-like) 4 233 IPR011009 -
Vian1g03117 254 Pfam Domain of unknown function (DUF3403) 208 254 IPR021820 GO:0004674
Vian1g03117 254 ProSiteProfiles Protein kinase domain profile. 1 221 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03117 254 PIRSF ILK 2 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03117 Vian-Chr1 51921789 51922815 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03117 2 254 Receptor kinase-like Gene Family AT4G11530 58.846 1.80e-104 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vian1g03117 PK_Tyr_Ser-Thr 6.4e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03117 - - aprc:113860154 459.144