Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03114 ATGGCATCGACGAACGTTTCGGCCAAGCTTTTGGACACTGGAAACCTAGTTTTGATCCAAGCCGACAAAATTGTTTTTCGTTGGCAGAGTTTTGACTATCCTAGTAATACTATGCTTCCGTTCATGAAACTCGGGTTGAACAGAAAAACCGGTCTGGACCGGTTTTTAACTTCTTGGAAATCGGCCAACGACCCTGGAACCGGGAACTTGACGTATAAAATCGACCCAACCGGGTTTCCGCAGCTGTTTCTTTACAGAGGGGATGCCCCGTTGTGGAGGGTCGGGTCATGGACGGGTCAGAGATGGAGCGGGGTGCCCGAGATGACTCCGAATTTTATTTTCAACGTTAGCTACGTGAACGACGAGAAAGAGGTTTCGATAATGTACGGAGTGAAGGACCCGACGGTGTTCTCGAGAATGGTGCTGGAGGAGACTGGGCACGTGACGAGGTTCACGTGGCAGGGTCGCGAGCACAGGTGGTTTTCGATATGGGACGCGCCAAAGGAGGAGTGCGACAACTTCAGGCAGTGTGGGTCGAACGCGAACTGCGACCCGTATCACGCGGATAAGTTCGAGTGCGAGTGTTTGCCGGGATTCGAACCGAGGTCCGAGAGGGAGTGGTTTCTTCGAGACGGGTCAGGTGGTTGCATTCGGAAGAGCAATGTGTCCACGTGTGGAAGCGGAGAGGGGTTTGTGGAGGTGCCACATGTGAAGGTTCCGGACACGTCGAAGGCGCGTGTGGTGGCAATGATCGGAATGAGAGAGTGCAGAGAGAGATGTTTGAAAGATTGCACGTGTGCGGCTTACACGAGTGCGAACGAGAGCTCAGAGAGTGGGTGTCTTACTTGGCACGGGGACATGGAGGACACGAGGACCTACACGCAAGTAGGACAGAGCTTGTACGTGCGAGTGGATGCGCTTGAATTGGCTAAATATGCAAAACATCCGTATGGTTCTCTTGGAAAGAAGGGAATGGTGGTAATTTTGACCATTGCTATTCTTATGGCATTGTTTTTGGCAGTGACTTTCGTGTGTTGGTCTGTTAAAGACAGGAAACAAGGGATAAAAAGGGATCGCAAGTATTCCTTTCGTCTTAACTTGGAGGACTCTACCGATCTACAAGAATTTGACTCTACAAAAAATTCAGATTTGCCATTCTTTGATCTTAGCTCCATTGCTGCTGCCACAGACAATTTCTCTGATTCTAACAAGCTTGGTCAAGGGGGCTTTGGTTCTGTTTATAAGGGTCTACTGAGTAATGGAATGGAAATAGCAGTGAAGAGGCTGTCAAAGAACTCTGGACAAGGCATAGAAGAGTTTAAAAATGAGGTGGTTTTGATCTCAAAGCTCCAACACAGAAATCTTGTGAGGATCTTAGGTTGCTGCATTCAAGGAGAGGAGAAGATGTTAATCTATGAGTATTTGCCTAACAAGAGTTTGGACTCTCTAATTTATGATGAATCTAAAAGGTCACAACTAGACTGGAAAAAGCGATTTGATATCATCTGTGGGATTGCTAGAGGAATTTTATACCTTCATCAAGATTCACGATTGAGAATCATTCATAGAGACCTAAAAGCCAGCAATGTCTTGCTGGACTCTGCATTGAACCCCAAAATTGCAGATTTTGGTATGGCTAGAATATTTGGTGGAGACCAAATTGAAGCAAACACAAACCGTGTTGTTGGAACCTATGGCTATATGTCACCAGAATATGCCATGGAAGGACAATTTTCAATAAAGTCTGATGTATACAGCTTCGGAGTTTTACTTCTAGAGATCATTACAGGCAGAAAGAACAGTGGTCAATATGAAGACATTACAACCACAAATTTAGTTGGACATATATGGGAACTATGGAGAGAAGGAAAAACCATGGAGATCGTTGATCAATCATTAGGAGAGTCGCTCTGTGACCTTGAAGTCCAAAGATGCATACAAATTGGTCTTTTGTGCGTGCAAGATTATGCCGCCGACAGACCATCTATGTCAGCAGTTGTTTTCATGCTGGGTAATGACTCAACTCTTCCTGACCCAAAACAACCAGCATTTATTTTCAAGAAAACTAATTATGAGAGCTCAAATCCATCAACCAGTGAAGGAATTTATTCAGTAAATGATGCAAGTATAACTATGATTGAAGCTCGCTGA 2151 0.4528 MASTNVSAKLLDTGNLVLIQADKIVFRWQSFDYPSNTMLPFMKLGLNRKTGLDRFLTSWKSANDPGTGNLTYKIDPTGFPQLFLYRGDAPLWRVGSWTGQRWSGVPEMTPNFIFNVSYVNDEKEVSIMYGVKDPTVFSRMVLEETGHVTRFTWQGREHRWFSIWDAPKEECDNFRQCGSNANCDPYHADKFECECLPGFEPRSEREWFLRDGSGGCIRKSNVSTCGSGEGFVEVPHVKVPDTSKARVVAMIGMRECRERCLKDCTCAAYTSANESSESGCLTWHGDMEDTRTYTQVGQSLYVRVDALELAKYAKHPYGSLGKKGMVVILTIAILMALFLAVTFVCWSVKDRKQGIKRDRKYSFRLNLEDSTDLQEFDSTKNSDLPFFDLSSIAAATDNFSDSNKLGQGGFGSVYKGLLSNGMEIAVKRLSKNSGQGIEEFKNEVVLISKLQHRNLVRILGCCIQGEEKMLIYEYLPNKSLDSLIYDESKRSQLDWKKRFDIICGIARGILYLHQDSRLRIIHRDLKASNVLLDSALNPKIADFGMARIFGGDQIEANTNRVVGTYGYMSPEYAMEGQFSIKSDVYSFGVLLLEIITGRKNSGQYEDITTTNLVGHIWELWREGKTMEIVDQSLGESLCDLEVQRCIQIGLLCVQDYAADRPSMSAVVFMLGNDSTLPDPKQPAFIFKKTNYESSNPSTSEGIYSVNDASITMIEAR 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03114 716 Gene3D Phosphorylase Kinase; domain 1 360 474 - -
Vian1g03114 716 CDD EGF_CA 170 203 - -
Vian1g03114 716 SMART serkin_6 399 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03114 716 Gene3D Transferase(Phosphotransferase) domain 1 475 680 - -
Vian1g03114 716 Pfam Protein tyrosine and serine/threonine kinase 402 667 IPR001245 GO:0004672|GO:0006468
Vian1g03114 716 ProSiteProfiles EGF-like domain profile. 167 204 IPR000742 -
Vian1g03114 716 Pfam S-locus glycoprotein domain 92 202 IPR000858 GO:0048544
Vian1g03114 716 ProSiteProfiles PAN/Apple domain profile. 225 305 IPR003609 -
Vian1g03114 716 Pfam PAN-like domain 225 289 IPR003609 -
Vian1g03114 716 SUPERFAMILY Protein kinase-like (PK-like) 383 694 IPR011009 -
Vian1g03114 716 Pfam D-mannose binding lectin 3 60 IPR001480 -
Vian1g03114 716 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 475 678 - -
Vian1g03114 716 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 4 662 - -
Vian1g03114 716 SUPERFAMILY alpha-D-mannose-specific plant lectins 4 65 IPR036426 -
Vian1g03114 716 PIRSF SRK 1 716 IPR024171 GO:0004674
Vian1g03114 716 CDD STKc_IRAK 405 670 - -
Vian1g03114 716 SMART ntp_6 226 304 IPR003609 -
Vian1g03114 716 ProSitePatterns Protein kinases ATP-binding region signature. 405 427 IPR017441 GO:0005524
Vian1g03114 716 CDD PAN_AP_plant 223 304 - -
Vian1g03114 716 ProSiteProfiles Protein kinase domain profile. 399 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03114 716 Pfam Domain of unknown function (DUF3403) 672 716 IPR021820 GO:0004674
Vian1g03114 716 ProSitePatterns Serine/Threonine protein kinases active-site signature. 520 532 IPR008271 GO:0004672|GO:0006468
Vian1g03114 716 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 364 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03114 Vian-Chr1 51861563 51866888 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03114 359 716 Receptor kinase-like Gene Family AT4G11530 58.356 4.53e-139 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vian1g03114 PK_Tyr_Ser-Thr 1.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03114 - - gmx:100812814 1308.89