Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03111 ATGGCTGAAGAGTTTCAAGCTAGAATTTGTGGTGAAAACTGGTGGAGTAGTTCTATTGATTCATCACCGATTGCTTCTTCTCCTTGTTCCGTGGCAGCTCATAATGATGCAGGAATCTACAGCACTCGTCAAACAGATTTGAAGGCAACCAAGTGCTGTGTTGAAGAGACTAACAATTTGCTTTCCAACACGTACCTGGGTTTTGCTGATGCACAGAAGTCACCCAAGAGTGAATCAGCCAGAGGAAGTGACAGCTTGTTGATCGATTCCACCTTACAGATGATGGGTTTTGGCCTTACATCTTCAGCATCAGACAATTGGAATCAACATCTATTAGTTCGATGCAATGGAAGGGCAGAGAGCAATTTTGATTCCGTGCTTCAGGAAGAAACGGGAATAGATTCTTCTAATTCACAAATCCGCAGGAATTGGAACCCAAAGAGCTTCTCCTGTGCTGGTGGAGGACACCAACAAATTGATAATTTCAAGCCATTGAACCAAGAATTTTCAGTAGATTACCAGAATCTATGTTCGTTAACCAGTAATGGGTTATCATCAAATCGTGATTTTGCAATTGGATCAGCCTCATATGGTAACCCTTCACCGTTACGAAGCTTATATGAACCTGATCCTCATCCACAATTACCACAGCACTCACTTTTCACCAACCATTCAATGTCCTATTCATCAAAAGCAAGTTATGGGACACCCTGCACTGAACTAACGCCAACATGGTCTAAAGTCACTACTTTTCTAAAGCCCACAACTATAGCAAAGCAACACCCTATTGGACTTCACTTTTCTAACAACACCACTTTCTGGAGTGCTTCCGCCGACGCACTTAACGACATAAGAGCAGGTACCTTTGCTTCATCACAATCACAATATCAAACGCCAACTTTCGATCAAGAGAAACCCAATTGCCCAAGTACTCTATTAAACAAGCTCAACAGTGAAGAAACTCTAGATTCAGCAACAATGGCGAAGAAAGATGCTTGTGAAGCATCATTAAAGAGGCCAAGGATTGAAACTCCATCCCCATTACCGACTTTTAAGGTTCGGAAAGAGAAGCTAGGGGACCGGGTCACTGCTCTTCAGCAATTGGTTTCACCTTTCGGAAAGACCGACACCGCATCCGTTCTTCACGAAGCCATCGAGTACATCAAGTTCCTTCATGATCAAGTCAATGTTTTGAGTACCTCATATATGAAAACCGGAGCTCCCATCCAACTGCAGCAGGTGTGTGATGATCTGAAAGACTCAGAAGGACAACATGAAGATTTAAAAAGTCGAGGTCTGTGTCTGGTACCGATTTCAAGCACATTTCCAGTTGCAACAGAAACCACTAGCAGTGCTGAATTGTGGACGCCTACATTCAGGGGCGCTCTGTTGAGGTAG 1398 0.4342 MAEEFQARICGENWWSSSIDSSPIASSPCSVAAHNDAGIYSTRQTDLKATKCCVEETNNLLSNTYLGFADAQKSPKSESARGSDSLLIDSTLQMMGFGLTSSASDNWNQHLLVRCNGRAESNFDSVLQEETGIDSSNSQIRRNWNPKSFSCAGGGHQQIDNFKPLNQEFSVDYQNLCSLTSNGLSSNRDFAIGSASYGNPSPLRSLYEPDPHPQLPQHSLFTNHSMSYSSKASYGTPCTELTPTWSKVTTFLKPTTIAKQHPIGLHFSNNTTFWSASADALNDIRAGTFASSQSQYQTPTFDQEKPNCPSTLLNKLNSEETLDSATMAKKDACEASLKRPRIETPSPLPTFKVRKEKLGDRVTALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVNVLSTSYMKTGAPIQLQQVCDDLKDSEGQHEDLKSRGLCLVPISSTFPVATETTSSAELWTPTFRGALLR 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03111 465 CDD bHLH_AtbHLH_like 348 399 IPR045239 -
Vian1g03111 465 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 352 410 IPR036638 GO:0046983
Vian1g03111 465 Coils Coil 411 431 - -
Vian1g03111 465 FunFam Transcription factor bHLH123 family 352 414 - -
Vian1g03111 465 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 181 443 - -
Vian1g03111 465 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 342 391 IPR011598 GO:0046983
Vian1g03111 465 Gene3D - 352 422 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03111 Vian-Chr1 51768192 51771529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03111 267 465 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G61660 51.707 1.05e-50 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03111 - - gmx:100784084 665.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03111 1 51768192 51771529 Vian6g01871 6 36044202 36046700 PCT